Lipotes vexillifer (Yangtze River dolphin): 103090735
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Entry
103090735 CDS
T03090
Symbol
FDFT1
Name
(RefSeq) squalene synthase isoform X1
KO
K00801
farnesyl-diphosphate farnesyltransferase [EC:
2.5.1.21
]
Organism
lve
Lipotes vexillifer (Yangtze River dolphin)
Pathway
lve00100
Steroid biosynthesis
lve01100
Metabolic pathways
Module
lve_M00101
Cholesterol biosynthesis, FPP => cholesterol
Brite
KEGG Orthology (KO) [BR:
lve00001
]
09100 Metabolism
09103 Lipid metabolism
00100 Steroid biosynthesis
103090735 (FDFT1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
lve01006
]
103090735 (FDFT1)
Enzymes [BR:
lve01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.21 squalene synthase
103090735 (FDFT1)
Prenyltransferases [BR:
lve01006
]
Terpene biosynthesis
Squalene/phytoene synthase
103090735 (FDFT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SQS_PSY
SCC3_C
HAUS4
Octopine_DH
Motif
Other DBs
NCBI-GeneID:
103090735
NCBI-ProteinID:
XP_007471180
UniProt:
A0A340YIC4
LinkDB
All DBs
Position
Unknown
AA seq
471 aa
AA seq
DB search
MAAVACGTKAMSLFKRTLVLSPGAAPRGAGTPPRGCPLPAAAWPSKDRPRGEGVCGRLRS
PAAAGRPPQPHSSPSASPTAVCLLCPQDSLSSSLKTCYKYLNQTSRSFAAVIQALDGEMR
HAVCIFYLVLRALDTLEDDMTISIGRKVPLLHNFHSYLYEPDWRFTESKEKDRQVLEDFP
TISLEFRNLAEKYQTVIVDICRKMGFGMAEFLDKRVMSEQEWDKYCHYVAGLVGIGLSRL
FSASELEDPLIGEDTELANSMGLFLQKTNIIRDYLEDQREGREFWPQEAWSKYVNKLGDF
AKPENMDLAVHCLNELIASTLHHIPDVITYLSRLRNQSIFNFCAIPQVMAIATLAACYNN
QQVFKGVVKIRKGQAVTLMMDATNMPAVKAIIHQYMEEIYHRIPNSDPCSTKTRQIISTI
RTQNLPNCQLISRSHYSPIYLSFVMLLAALSWQYLSTLSQVTEDYVQTGER
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atggccgcagtcgcctgcggcaccaaggccatgtcccttttcaagcggaccttggtgctg
agccccggcgcggcgcccaggggcgcgggcactcccccgcgcggctgccccttgcccgcc
gccgcttggccctccaaggaccggccgcggggagagggcgtgtgcggccggctgcggagc
cccgcggcagccggccgcccgccccagccccactccagcccctccgcgtctcccaccgcc
gtgtgtctcctctgcccgcaggactcgctcagcagcagcttgaaaacttgttacaagtac
ttgaatcagaccagtcgcagtttcgcagctgttatccaggcgctggatggggaaatgcgc
catgcagtatgcatattttatctggttctccgagcactggacactctggaagatgacatg
accatcagtataggaagaaaggtccccctgttacacaacttccactcgtacctttatgag
cccgactggcggttcacggagagcaaggagaaggaccgacaagtcctggaggactttcca
acgatctccctggagtttcgaaatctggctgagaaataccaaacagtgatagttgacatt
tgccggaagatgggatttgggatggcagagtttttggacaagcgtgtgatgtctgaacag
gagtgggacaagtactgtcactatgttgctgggctggtgggaattggcctttctcgtctg
ttctcggcctcagagttagaagatcccttaattggtgaagacacagagcttgccaactct
atgggcctgtttctgcagaaaacaaacatcatccgtgattatctggaagaccagcgagaa
ggaagagagttttggcctcaagaggcttggagcaagtatgtgaacaagctgggtgacttt
gccaagccagagaacatggacttggccgtgcattgcctgaatgagctcatagccagcacg
ctgcaccacatccctgacgtcatcacttacctttcacgacttagaaaccagagcatattc
aacttctgtgctattccacaggtcatggccattgccactttggctgcctgttataataat
cagcaggtattcaaaggggtggtgaagatacgaaaagggcaagcagtcaccctgatgatg
gatgccaccaacatgccagctgtaaaagctataatacaccagtacatggaagagatttat
cacaggatccccaactccgacccatgttctactaaaacaaggcagatcatctccacgatc
aggacacagaatcttcccaactgtcagctcatctctcggagccactactcacccatttac
ctgtcgtttgtcatgctcctggcggccctgagctggcagtatctgagcaccctgtcccag
gtcacagaggactatgttcagaccggagaacgctga
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