Lysobacter yananisis: RDV84_08440
Help
Entry
RDV84_08440 CDS
T09342
Symbol
hemB
Name
(GenBank) porphobilinogen synthase
KO
K01698
porphobilinogen synthase [EC:
4.2.1.24
]
Organism
lya
Lysobacter yananisis
Pathway
lya00860
Porphyrin metabolism
lya01100
Metabolic pathways
lya01110
Biosynthesis of secondary metabolites
lya01120
Microbial metabolism in diverse environments
lya01240
Biosynthesis of cofactors
Module
lya_M00121
Heme biosynthesis, plants and bacteria, glutamate => heme
lya_M00846
Siroheme biosynthesis, glutamyl-tRNA => siroheme
Brite
KEGG Orthology (KO) [BR:
lya00001
]
09100 Metabolism
09108 Metabolism of cofactors and vitamins
00860 Porphyrin metabolism
RDV84_08440 (hemB)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lya04147
]
RDV84_08440 (hemB)
Enzymes [BR:
lya01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.24 porphobilinogen synthase
RDV84_08440 (hemB)
Exosome [BR:
lya04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
RDV84_08440 (hemB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ALAD
Motif
Other DBs
NCBI-ProteinID:
WMT04854
UniProt:
A0AA51SJE3
LinkDB
All DBs
Position
complement(2002177..2003169)
Genome browser
AA seq
330 aa
AA seq
DB search
MSYPYTRPRRMRRDDFSRRLMRETVLTANDLIYPVFVHELDGRAPVGSMPGIERLSIDEL
LRVAERASELRVPALALFPVTAPEAKSLTAEAAWQDDGLCQRAVRALKQRFPDLGVITDV
ALDPYTTHGQDGLIDDSGYVMNDETVEALVKQALSHAAAGADVVAPSDMMDGRIGQIRAE
LESQGHIHTRILAYSAKYASSFYGPFRDAVGSAGALGKGNKYTYQMDPANSDEAMREIAL
DLDEGADMIMVKPGMPYLDIVRRAKDEFGAPTFVYQVSGEYAMLRAAIGNGWLDERGCVM
EALTSIKRAGADGVLTYFALDAAQWMREAG
NT seq
993 nt
NT seq
+upstream
nt +downstream
nt
atgagctacccctacacccgcccgcggcggatgcgccgcgacgacttctcgcgccggttg
atgcgcgagaccgtcctcaccgcgaacgacctgatctacccggtcttcgtccacgaactc
gacggccgtgccccggtcggctcgatgcccggcatcgagcgcctgtcgatcgacgaactg
ctgcgcgtggccgaacgcgccagcgaactgcgggtgccggcgctggcgctgttcccggtc
accgcgccggaagccaagtcgctgaccgccgaagccgcgtggcaggacgacggcctgtgc
cagcgcgcggtgcgcgcgctcaagcagcgcttcccggacctgggcgtgatcaccgacgtc
gccctcgacccctacaccacccacggccaggacgggctgatcgacgacagcggttacgtc
atgaacgacgaaaccgtcgaagccctggtcaagcaggcgctgtcgcacgccgccgccggc
gccgacgtcgtcgcgccgagcgacatgatggacggccgcatcggccagatccgcgccgag
ctggaaagccagggccacatccacacccgcatcctggcctacagcgccaagtacgcctcc
agcttctatggcccgttccgcgacgcggtcggctcggccggcgcgctcggcaagggcaac
aagtacacctaccagatggacccggccaacagcgacgaagcgatgcgcgagatcgcgctc
gacctcgacgaaggcgccgacatgatcatggtcaagcccgggatgccgtacctggacatc
gtgcgccgggccaaggacgaattcggcgcgccgaccttcgtctaccaggtcagcggcgag
tacgcgatgctgcgcgcggcgatcggcaacggctggctcgacgaacgcggctgcgtgatg
gaagcgctgacctcgatcaagcgcgccggcgccgacggggtgctgacctacttcgcattg
gatgcggcgcagtggatgcgcgaggcgggctga
DBGET
integrated database retrieval system
