Lysinibacillus sp. YS11: LBYS11_16190
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Entry
LBYS11_16190 CDS
T05299
Name
(GenBank) DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
lys
Lysinibacillus sp. YS11
Pathway
lys03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
lys00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
LBYS11_16190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lys03400
]
LBYS11_16190
Enzymes [BR:
lys01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
LBYS11_16190
DNA repair and recombination proteins [BR:
lys03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
LBYS11_16190
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AUS89080
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Position
complement(3253367..3254242)
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AA seq
291 aa
AA seq
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MLLQMGNNNEIDDNPEWIYDIKWDGWRILLHKEGDRVEAFTRHGNNVTAKFPELQEVGRS
IQSHTAIIDCEGVVLRNGVSVFDDFAFRGRLSNTSKIQQATLTHPATFIAFDVLATDKTH
TNKPLVERKEILSSIIEPSSNLLVTPSIGGNGSNIFQLTKERTMEGIVGKRSNSTYKTNH
RSHDWLKYKHFKIIDTVILGYKENPFTMLVGTQINGKYKPLANVEFGLKPEEKTAFREIA
KQIVTKVERDMMWVEPILCCKVQYLEKTNTGSLRIVSFKGFNFDKVPEEIY
NT seq
876 nt
NT seq
+upstream
nt +downstream
nt
atgttacttcagatgggtaacaacaatgaaatagatgacaatcctgaatggatttacgat
ataaaatgggatggttggcgcatccttttgcataaagaaggggatagagtcgaggctttt
acccgtcatggtaataatgtgacagctaagtttcctgaacttcaagaggttggccgttca
attcagtcacatacagcaattattgactgtgaaggtgtagttcttcgaaatggtgtatct
gtatttgatgattttgcattcaggggcagactttctaatacgagtaagattcagcaggct
actttaactcacccagctacattcattgcttttgatgtactagcgactgataaaactcat
acaaacaagccattagttgagcgtaaggaaatactgtcgtcgattattgaaccatcaagc
aatttacttgtcacaccatcaattgggggcaacggtagcaatatctttcagttaactaaa
gaacgtaccatggagggtattgtaggtaagcgaagtaattcaacatacaaaactaatcat
agatcgcatgattggttaaaatataaacactttaaaatcatagatactgttatcttaggc
tataaagaaaatccatttacaatgttggtgggtactcaaattaacggtaagtacaaacca
ctcgcaaatgtagaatttggattaaagccagaagaaaaaactgcattcagagaaatagct
aaacaaatcgttaccaaagtagaacgagatatgatgtgggtggaacccatactgtgctgc
aaagttcaatatcttgagaaaacaaatactgggtcactacgaattgtatcctttaaagga
tttaattttgataaagtacctgaagaaatatactaa
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