Methanosarcina acetivorans: MA_2571
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Entry
MA_2571 CDS
T00080
Symbol
lig
Name
(GenBank) DNA ligase (ATP)
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
mac
Methanosarcina acetivorans
Pathway
mac03030
DNA replication
mac03410
Base excision repair
mac03420
Nucleotide excision repair
mac03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MA_2571 (lig)
03410 Base excision repair
MA_2571 (lig)
03420 Nucleotide excision repair
MA_2571 (lig)
03430 Mismatch repair
MA_2571 (lig)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mac03032
]
MA_2571 (lig)
03400 DNA repair and recombination proteins [BR:
mac03400
]
MA_2571 (lig)
Enzymes [BR:
mac01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MA_2571 (lig)
6.5.1.6 DNA ligase (ATP or NAD+)
MA_2571 (lig)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
MA_2571 (lig)
DNA replication proteins [BR:
mac03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
MA_2571 (lig)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
MA_2571 (lig)
DNA repair and recombination proteins [BR:
mac03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
MA_2571 (lig)
NER (nucleotide excision repair)
Other NER factors
MA_2571 (lig)
MMR (mismatch excision repair)
Other MMR factors
MA_2571 (lig)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AAM05952
UniProt:
Q8TMT1
LinkDB
All DBs
Position
complement(3197504..3199210)
Genome browser
AA seq
568 aa
AA seq
DB search
MTSFREFAETCQAIEKISSTIETTNKVADLLKKVDVEELPLATHFIMSEVFPAWSGEQLG
IGTSLLYSSLSKASGMSVRSIESLIRTTGDIGETALLILKEKRKNQVTFSSFLEEQPELS
ITEVYQRFKTASEASGKGSQELKIKNLQFLFNSSTPREAKYISRLALEELRIGVGEGVVR
DAIARAFSVPSDKVEHAFMVTNDLGIVAAAAKEGGIEALESLGIEINRPIKMMLSQISPD
IDADIRDMKGAAIEWKFDGARVQIHKNGNSVTLFSRKLENVTNSLPDLVEIIRKHVKAES
AILDGEAVAVDENGKPRAFQEILKRFRRKYDVEEKALGIPIQLNLFDIMYLNGRTLIDLP
LVERRKALESCVESSVEDSKSISVDEQVITGDLELVEKIYREALNAGHEGVMVKNPNSAY
SPGKRGKNWLKKKPLMETLDLVVVGAEWGYGRRANLIGSYSVACYDPETSRFLQVGKVGT
GLTDEQLKELTEMLSGLMEGGEAGGVFAIRPKVVLEIAFEEIQKSPNYDSGFALRFPRFI
RIRDDKDPEEADTIQRIGRVYSQQLKRL
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
atgacaagcttcagggaatttgcagaaacctgccaggcgattgaaaagatatcgagtact
attgaaaccacaaataaagttgccgacctcctcaaaaaggttgacgtggaagaactgcct
cttgcaactcactttatcatgagtgaagttttccctgcctggagtggagagcaactcggg
atcggcacaagcctgctgtatagttctctctccaaggcttccggaatgtctgtaagaagt
atagaatctcttatccggaccacaggagatatcggggaaaccgcacttcttattttaaag
gagaaaaggaaaaatcaggtgacattttcttctttccttgaggagcagccggaactttca
ataactgaggtttaccagcggttcaaaacagcttccgaagcctcgggaaaaggttctcag
gaactcaaaatcaaaaaccttcagttcctctttaattcctcaactccaagggaagcaaag
tacatttccaggcttgcccttgaagaactccgaataggagtaggagaaggagttgtccgg
gatgcgattgccagagccttttccgtcccttcggataaggtagaacatgccttcatggtc
acaaatgatctggggatagttgctgcagctgccaaggaaggcgggatagaagcccttgag
agtttggggatcgagattaatcgcccaataaaaatgatgctctctcagatcagcccggac
atagatgccgatataagggacatgaagggagctgcaattgaatggaaattcgatggggca
agggtccagatccacaagaatggaaattcggttactcttttttcccgaaagcttgaaaac
gtcacaaactccctccctgaccttgttgaaataatccggaaacatgtaaaggccgagtcc
gcaatccttgacggggaagccgtagctgtggatgaaaacggaaaacccagggcttttcag
gagatccttaagcgcttcaggcgcaaatacgatgtggaagaaaaagctctcggaattcct
atccagctaaatctctttgacattatgtacctgaacggcaggaccctgatcgatcttcct
cttgtcgaacggcgaaaagctcttgagtcctgtgtggagagctcggttgaagactcaaag
tctatctctgtggacgagcaggtgataaccggagatctcgaacttgtggaaaagatctac
agggaagctttgaatgccggacatgaaggtgtcatggtcaaaaacccgaactcggcatat
tccccgggcaaacgcggcaaaaactggctgaagaaaaaaccccttatggaaactcttgac
cttgtggttgtgggagcagaatggggctacgggcgcagggcaaacctgatcggttcatat
tcggttgcctgctacgaccccgagacctcacgcttcctgcaggtcggcaaggttggcacc
gggcttaccgatgagcagttgaaggaacttacggaaatgctctcaggcctgatggaaggc
ggagaagccggaggagtctttgctataagaccgaaggttgttctggaaatcgcttttgag
gaaatccagaaaagccccaactacgactcgggctttgcactgcgtttcccccgctttatc
cgcatccgggacgataaagaccccgaagaagccgataccatccagcggatcgggcgcgtc
tacagtcagcaattaaaaagactttaa
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