Microbulbifer agarilyticus: Mag101_07755
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Entry
Mag101_07755 CDS
T04709
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
maga
Microbulbifer agarilyticus
Pathway
maga03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
maga00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Mag101_07755
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
maga03400
]
Mag101_07755
Enzymes [BR:
maga01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Mag101_07755
DNA repair and recombination proteins [BR:
maga03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Mag101_07755
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
RecG_dom3_C
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AQQ67547
UniProt:
A0A1Q2M5I4
LinkDB
All DBs
Position
complement(1900914..1904411)
Genome browser
AA seq
1165 aa
AA seq
DB search
MSQLPPLSPPAFRSQNDRQFWGQLHGASAALAILKAAESSSAPTLLIARNSQEAHQLEVQ
LKFFNKPRRDGADGDTLQRRDGALEIFQFPDWEILPYDTFSPHQDIISDRLATLYQLPQM
GSGIVIVPVSTLLHRLAPKDYVAGNALVLKEGQKFDLNAQRKLLEQAGYHCVDTVYEHGE
FAVRGSLMDIFPMGSNLPYRIDLFDDEIESLRTFDPEDQRTVDKVEQIHLLPAREFPMHK
LALAKFLERWHGQFDCDPGPVSIYQDISAGIAPAGIEYYLPLFFDECASLFDYLPERSQV
FIQGDLKQPVESFWREAENRFESRRGDLTRPILEPSKVLLNVDEFYGALKHLPRAFFSNE
SLPEAEGNYNFATGTPPNLPVDGKSEQPLKALEAYLMEYKGRVLFCAESGGRREALLELL
SGIRLKPKTLNCWQDFVDGEDQIAITVSPIDQGLILEDPQLNLIAEPQLFGDRVLQQRRR
RKAKEEADNAVKNLAELRINAPVVHIDHGVGRYKGLQSLDIDGQPAEFLTLEYGDGAKLY
VPVASLHLISRYSGADEELAPLHKLGSETWQKAKRKAAEKVRDAAAELLDIYARREARVG
HAFGDPGLAYREFTAGFPFEETPDQQLAIEAVVGDMLSDKPMDRLVCGDVGFGKTEVAMR
AAFVAAHGGKQVAMLVPTTLLAQQHFQSLQDRFADWPISIEVISRFRSNKEVEAIKQRIT
EGKVDILVGTHKLLQSDLKFKNLGLLIIDEEHRFGVRQKEKLKSLRSEVDILNLTATPIP
RTLNMAMAGIRDLSVIATPPARRLSVKTFVRERDDALIKEAILREILRGGQVYFLHNEVK
SIERIAREIQEMVPEARIGIGHGQMRERELEQVMSDFYHKRFNVLVCTTIIETGIDVPSA
NTILIERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPNKRAMTGDAVKRLEAISEAQDLG
AGFTLATHDLEIRGAGELLGEEQSGQIQSVGFNLYMEMLDHAVKAIREGRTPNIDEPLES
PAVDVNLRVPALIPEDYLPDVHSRLIMYKRIANAEDKNALKELQVEMIDRFGLFPEPLKH
LFRITEIKLNANQMGIRKLEASASRGRIEFAENAKVDPLTLVKLVQSRPTTFQLQGANHL
NFALDESGPEQRLQQVNDVLQQLSQ
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atgagtcagctcccccctttgtccccgcccgcatttcgcagccagaatgaccgccaattc
tgggggcagctacacggcgccagcgcagccctcgccatcctgaaggccgctgagtcgagc
tcagcgccaaccctgctgatcgcccgcaacagccaggaagcacaccaacttgaggtgcag
ctgaaattttttaacaagccgcggcgagatggggcagacggcgacacccttcagaggagg
gatggcgcactggagattttccagttcccggactgggaaattctgccctacgacaccttc
tcacctcaccaggacatcatctcagatcgactggccaccttgtaccagttaccccagatg
ggcagcggcattgtcattgtgccggtgagcacgctgctgcaccggttggcaccgaaggat
tatgttgcaggcaacgcactggtattgaaggaaggacagaagttcgacctgaacgcgcaa
cgcaaactgctcgagcaagccggataccactgtgttgataccgtatatgaacacggtgaa
ttcgccgtgcgcggctcgctgatggacatctttccaatgggcagcaacctgccctaccgc
atcgatctgtttgacgacgaaattgaatccctgcgcaccttcgacccggaagaccagcgc
accgtggacaaagtggagcaaattcacctgctccccgcgcgcgaattcccgatgcacaaa
ctggcattggcgaagtttcttgagcgctggcatgggcaatttgattgcgatccaggcccc
gtatccatctaccaggacatcagtgccggcattgcccccgccggtatcgaatactaccta
ccgctgttctttgatgagtgtgcaagcctgttcgactacttgccagaacgcagccaggtg
tttatccagggcgacctcaagcagccggtggagtccttctggcgcgaagcggaaaaccgc
tttgagagccgccgcggcgacctgacccggccgattctggaaccgagcaaagtattgctc
aacgtggacgagttttacggggcattgaagcacctgccgcgcgccttcttttccaacgaa
tccctcccggaagcggaaggcaattacaacttcgcgaccggtacccccccaaacctgccg
gtcgatggcaaatccgagcagccactgaaagctctcgaagcctatttaatggagtacaaa
ggccgcgtgctgttttgtgcagaaagcggtggccgacgcgaggcattgctggaactgctc
agcgggattcgcctgaagccgaagacgctcaattgctggcaggactttgtcgacggtgaa
gatcaaatcgcaatcaccgtatcccctatcgaccagggcctgattcttgaggacccgcaa
ctcaacctgatcgcagaaccgcaattgtttggtgaccgggtactgcagcagcgcagacgc
cgcaaggccaaagaggaagcggacaacgcggtaaaaaatctggcggagctgcgtatcaac
gcaccggttgtgcatatcgatcacggggtcggccgctataaaggcctgcagagcctcgat
atcgatggccagcccgcagagtttcttaccctagaatatggtgatggcgccaagctgtat
gttccggtggccagcctgcacctgattagccgctattccggtgccgacgaggaactcgcg
ccactgcacaaactgggcagtgagacctggcaaaaagccaagcgcaaggccgcagaaaaa
gtccgtgatgcagcggcagaactactcgacatctatgcacggcgcgaggcccgtgtgggg
catgcgtttggcgacccgggactcgcgtatcgcgaattcaccgccggcttcccgtttgag
gagaccccggatcagcaactcgccattgaagccgtggtgggagacatgctgtccgacaag
cccatggaccggctggtgtgcggcgatgtgggcttcggtaaaaccgaagtggccatgcgt
gcagctttcgttgccgcacacggtggaaaacaggttgccatgctggtgcccaccacactg
ctggcgcagcagcactttcagtcgctgcaggaccgcttcgccgactggcctatttctatc
gaggtgatttctcgcttccgcagcaacaaggaagtggaggcgatcaagcagcgtatcacc
gaagggaaagtcgatatccttgtgggcacccacaagctactgcaaagcgacctcaagttt
aaaaacctggggctgctgatcatcgatgaagaacaccgcttcggagtccgccagaaagaa
aaactcaagagcctgcgctccgaagtagatatcctcaacctcaccgctaccccaattcca
cggacattgaatatggccatggcgggcattcgcgacctatccgtaattgccacaccaccg
gcgcgccgcctctcggtaaaaacctttgtccgcgagcgggacgacgcgctgatcaaagaa
gcgattttgcgcgagattctgcgcggtggtcaggtctatttcctgcacaacgaagtgaag
agtattgagcgcatcgcacgggaaattcaggagatggtgcctgaggcccgcatcggtatt
ggccacggccagatgcgcgagcgcgagctcgagcaggtgatgagcgatttctaccacaag
cgcttcaatgtactggtgtgtaccaccatcattgagaccggtatcgacgttcccagcgcc
aacaccattctgatcgagcgcgccgacaaatttggcctcgcgcagctgcatcagctgcgt
ggccgtgtaggccgctcccaccatcaggcctatgcctacctgttgaccccgaacaaacgg
gcaatgaccggcgacgcggtcaaacgactcgaggcgatcagcgaagcccaggacctggga
gcgggctttacccttgccacgcacgacctggagatccgcggtgccggtgaactgctgggc
gaagagcaaagcgggcagatacagagcgttggcttcaacctatatatggaaatgctggac
catgcggtcaaggccattcgcgaggggcgcaccccgaacatcgacgagccactggagtcc
cctgcggtcgacgtcaacctgcgggtaccggcattgattccggaggactacctgccggac
gtacacagccgcctaatcatgtacaaacgcatcgccaatgcggaagacaaaaacgccctc
aaagagttgcaggtagagatgatcgataggttcgggttgttccctgagccgctgaagcac
ctgttccgcatcaccgagatcaaactcaatgccaaccagatgggtatccgcaaactggaa
gcctctgccagtcgcggacgcattgagtttgccgagaacgcgaaggtggacccactgaca
ctggtgaaactggtgcagagccgcccgaccaccttccagctgcagggcgcaaaccacctg
aacttcgcgctcgacgaaagcggcccggagcagcgcctgcaacaggtcaacgacgtactg
caacagctgtcgcaatag
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