Magnetospirillum sp. XM-1: XM1_3160
Help
Entry
XM1_3160 CDS
T04231
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
magx
Magnetospirillum sp. XM-1
Pathway
magx03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
magx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
XM1_3160 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
magx03400
]
XM1_3160 (mfd)
Enzymes [BR:
magx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
XM1_3160 (mfd)
DNA repair and recombination proteins [BR:
magx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
XM1_3160 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
UB2H
RecG_dom3_C
SecA_DEAD
AAA_16
NitrOD2
Motif
Other DBs
NCBI-ProteinID:
CUW40221
UniProt:
A0A0U5MKH2
LinkDB
All DBs
Position
I:3137799..3141278
Genome browser
AA seq
1159 aa
AA seq
DB search
MKNLDKLIAGPGRRKVAGAPEGRDALLLAELAASPEATGGILHVARDEGRMARVAEALSF
FAPDLCVLEFPAWDCVPYDRVSPNVDVVARRIDTLARLADGVQGAFVVLTTVPALAQRVP
PREALAQATLDARKGSRLSMDRLTAFLSKNGYVRADTVMEPGEYAVRGGIIDLFPPGSAE
PLRLDFFGDEIDSVRAFDPMSQRTTGTVEGFVCRPVAELGLDEASIARFRAAYREMFGVV
QGADPLYEAISEGIKFNGMEHWLPLFHDGLDTLFAYVPDAAVVLDHQSDEALSARHALVL
EYFDARAGLAGSGLSESGMVYHPIPPERLYLERAEWDRLLGMRPVLHLSPFDPVDEAEAE
ADAGGRLGRDFADQRARPGINVYDCVREHAEEQAKAGRRLVIAAWTQGSRDRLAGVLKDH
GIKGIEAVDSWAEAQGLDKGKVAAAVLGLDHGFTTATLAVVTEQDILGDRLARPARKKKK
GAQFIAEASALAEGDLVVHVEHGIGRYDGLVAVEVSGAPHDCLRVIYDGGDKLFVPVENI
DVLTRFGSEQAGVSLDKLGGTAWQARKAKLKKRIRDIADQLIGIAAQRKMRQGEALTPAE
GLYDEFCARFPFAETDDQLRAIEDSIADLASGKPMDRLICGDVGFGKTEVALRVAFVAAL
QGLQVAVVVPTTLLARQHYRTFKERFAGLPVRVEHLSRLVTAKKASEVKAGVTDGSVDIV
VGTHALLAKGIGFKRLGLLIIDEEQHFGVAHKERLKQLKSDVHVLTLTATPIPRTLQMAL
SGVKEMSVIATPPVDRLAVRTFVLPYDPVVLREAILRERYRGGQVFYVCPRLADIDRVAE
RLAKLVPEVKTAVAHGRLAPADLEEVMVAFGDKQYDVLLSTNIIESGIDMPSVNTLIIHR
ADMFGLGQLYQLRGRVGRSKTRGYAYFTLPNDKVLSKAAEKRLQVMQALDTLGAGFQLAS
HDLDIRGAGNLLGEEQSGHIREVGIELYQQLLEEAVAAAKGGQGGEAAEEWSPQIAVGTP
VLIPETYVADLSVRLSLYRRIGSLADQAEIEALAAELIDRFGKLPPEVENLLEVVAIKAL
CKLAGIDKVDSGPKGAVVSLRGNVFANPGALVQFISRSAGTCKIRPDHKIVFLRAWEDPK
DRIVGLRKVIGKLAELASA
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaaacctggataaacttatcgccgggcccggccgccgcaaggtcgccggcgcgccg
gaagggcgcgacgccctgctgctggccgaattggcggcgtcgcctgaggcgaccggcgga
atcctgcacgtggcccgcgacgaaggccgcatggcccgggtggccgaggcgttgtccttc
ttcgcccccgatctttgcgtcctggaatttcccgcctgggattgcgtgccctatgaccgg
gtctcgcccaacgtggacgtggtggcgcggcgcatcgacaccctggcccggctcgccgac
ggggtgcagggcgccttcgtggtgctgaccaccgttcccgccctggcccaaagggtgccg
ccccgggaagccctggcccaggcgacgctcgacgcccgcaagggctcgcggctgtccatg
gacaggctgacggcctttctgtcgaagaacggctatgtgcgcgccgacacggtgatggag
cccggcgaatacgcggtgcggggcggcatcatcgacctgttcccgccgggttcggccgag
cccttgcgcctcgacttcttcggcgacgagatcgattcggtgcgcgctttcgatcccatg
agccagcgcaccaccggaaccgtggagggcttcgtctgccgcccggtggccgaattgggc
ctggacgaggcctccatcgcccgcttccgcgccgcctaccgcgagatgttcggggtggtg
caaggcgccgacccgctgtacgaggccatttccgagggcatcaagttcaacggcatggag
cattggctgccgctgttccatgacggactcgatacgctgttcgcctatgtgccggatgcg
gcggtggttctcgaccaccagtcggacgaggcgctttccgcccgtcacgccctggtgctg
gaatatttcgacgcccgcgccgggctggcgggatcgggcctgagcgaatcgggcatggtc
tatcaccccatcccgcccgagcggctttatctcgagcgcgccgaatgggaccggctgttg
ggcatgcgtcccgttctccacctgtcgcccttcgacccggtggacgaggccgaggccgag
gccgatgccggcgggcggctgggccgcgacttcgcagatcagcgggcccggccgggaatc
aacgtctacgactgcgtgcgcgaacacgccgaggagcaggccaaggccggccgccggctg
gtgatcgccgcctggacccagggctcgcgcgatcgcctcgccggggttctgaaggaccac
ggcatcaagggcatcgaggcggtggacagctgggccgaggctcaagggctggacaagggg
aaggtggcggcggccgttctcggcctcgaccacggctttaccactgcgacccttgccgtg
gtcaccgagcaggacatcctgggcgaccgtctggcccggcccgcccgcaagaagaagaag
ggcgcccagttcatcgccgaggcctcggccctggccgaaggcgatctggtggtgcatgtg
gagcacggcatcggccgctatgatgggctggtggccgtcgaggtgtcgggtgccccccac
gattgcctgcgggtgatctacgacggcggcgacaagctgttcgtgccggtggaaaacatc
gacgtcctgacccgcttcggctcggagcaggcgggcgtgtcgctggacaagctgggtggc
acggcgtggcaggccaggaaggccaagctcaagaagcgcatccgcgacatcgccgaccag
ctgatcggcatcgccgcccagcgcaagatgcgccagggcgaggcgctgaccccggccgag
gggctgtacgacgagttctgcgcccgcttccccttcgccgagaccgacgaccagctgcgc
gccatcgaggattccatcgctgatctggcgagcggaaagcccatggaccgcctgatctgc
ggcgacgtgggcttcggcaagaccgaggtggccttgcgcgtcgccttcgtggcggcgttg
caggggttgcaggttgccgtggtggtgcccaccacgctgctggcccgccagcattaccgc
accttcaaggagcgcttcgccggcctgccggtgcgcgtcgagcatctgtcccggctggtg
accgccaagaaggcgtccgaggtcaaggccggcgtgaccgacggctcggtggacatcgtg
gtcggcacccatgcgctgctggccaagggcatcggcttcaagcgcctggggcttctcatc
atcgacgaggagcagcatttcggcgtcgcccacaaggagcggctgaagcagctgaaatcc
gacgtccatgtgctgacgctcaccgccacgcccattccccgcacgctgcagatggcgctg
tcgggggtgaaggagatgagcgtcatcgccaccccgccggtggatcgcctggcggtgcgc
accttcgtgctgccctacgatcccgtcgtgctgcgcgaagccatcctgcgcgagcggtac
cggggcgggcaggtgttctatgtctgcccgcgcctagccgatatcgaccgggtggccgaa
cgcctggccaaactggtgcccgaggtcaagaccgccgtggcccatggccggctggccccc
gccgacctggaagaggtgatggtggccttcggcgacaagcagtacgacgtgctgctgtcc
accaacatcatcgaatccggcatcgacatgccaagcgtgaatacgctgatcatccaccgg
gccgacatgttcggcctgggccagctttaccagctgcgcggccgggtgggccgctccaag
acccgcggctacgcctactttacgctccccaacgacaaggtgctgtccaaggcggcggaa
aagcgcctgcaggtcatgcaggcgctcgacacattgggggccggcttccaattggccagc
catgacctcgacataaggggcgccggcaacctgctgggcgaggagcaatcgggccatatc
cgcgaggtgggcatcgagctttaccagcaattgctggaagaggccgtggccgccgccaag
ggcgggcagggcggcgaggcggccgaggaatggtcgccgcagatcgccgtcggcaccccg
gtgctgatccccgagacctatgtggccgatctgtcggtgcgcctgtcgctgtatcgccgc
atcggctcgcttgccgaccaggcggagatcgaggccctggccgccgagctgatcgaccgc
ttcggtaagctgcctccggaagtggagaacctgctggaagtggtcgccatcaaggccttg
tgcaagctggccggcatcgacaaggtggattccgggcccaagggcgccgtggtttccttg
cgcggcaacgtcttcgccaatccgggcgccctggtgcagttcatctcgcgctcggcggga
acctgcaagatccgtcccgaccacaagatcgtcttcctgcgcgcctgggaggatcccaag
gaccggattgtcggcctgcgcaaggtgatcggcaaattggcggaattggcttccgcctga
DBGET
integrated database retrieval system
