Megalobrama amblycephala (Wuchang bream): 125257911
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Entry
125257911 CDS
T08212
Symbol
col11a1a
Name
(RefSeq) collagen, type XI, alpha 1a isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
mamb
Megalobrama amblycephala (Wuchang bream)
Pathway
mamb04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
mamb00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
125257911 (col11a1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
mamb00536
]
125257911 (col11a1a)
Glycosaminoglycan binding proteins [BR:
mamb00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
125257911 (col11a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
125257911
NCBI-ProteinID:
XP_048030576
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All DBs
Position
LG22:complement(15871892..15963434)
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AA seq
1813 aa
AA seq
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MERPRWSPMWKTKRWLLDSTVFKFITVSLVLVLQAPHVRAAEHVDVLKVLEFPTVPEGVQ
KTSGFCTNRRASQPDTAYKIGKNAQISAPTKQLFPDGVFPEDFSILTTIKPKAGIQSFLL
SIYNEKGVQQLGVELGRSPLFLYEDQTGKPAPEDYPLFRSLNLADGKWHRVGISVEKKTV
TIVVDCKKKMTKPLGRSDHASIDTNGITVFGTRILDEEAFEGDIQQLLIVADPKAAYDYC
EHYSPDCDVPHKDTLQAQEPEEEYTTAVEYGDLYDYYEGATPTATEEYSEPQLNNVDGEY
YDYGTVDASKTRSPIATTGPNQAVEEEVFGDYVTETAQAGLDPTAAPEAALPSGTADPVG
VDAYDFKEYDLKEYDVTGLDKNQYEYGAYDEFGNAAPNPTSTYEDSFGPGVAAETDIAET
EVTSDVGGGAVLGQKGEKGEPAVIEPGMLIEGPAGPPGPAGLPGPPGLQGPPGSAGDPGD
RGPPGRAGLPGADGLPGPPGTMLMLPFRFGGDGEKGPVVSAQEAQAQAILSQARLAMRGP
PGPMGLTGRSGPVGLPGPPGLKGEGGDPGPQGPRGIQGPPGQIGKPGKRGRAGADGARGM
PGESGSKGDRGFDGLPGLPGEKGHRGENGPPGPPGPTGEDGPRGEDGEIGPRGLAGESGP
RGLLGPRGPPGPPGQPGIAGVDGPQGPKGNMGPQGEPGPPGQQGIPGTQGLPGPQGPIGP
PGEKGPQGRSGLPGLPGADGPPGHPGKEGPPGEKGALGQPGPQGPIGYPGPRGVKGADGV
RGLKGGKGEKGEDGFPGFKGDMGLKGDRGELGLAGPRGEDGPEGPKGRAGPNGEPGPLGP
AGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGGRGVAGKPGPRGQRGPTGPRGA
RGARGPTGKPGPKGTAGNDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQ
RGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAGGKEGAKGD
PGPQGSPGKDGPPGLRGFPGERGLPGVTGPPGLKGAEGPQGPPGPVGSPGERGAAGPAGP
IGLSGRTGPQGPPGPAGEKGAPGERGPPGPAGRDGVQGPVGLPGPAGPQGPPGEDGDKGE
VGEPGQKGSKGDKGEQGPPGPPGLQGTIGAPGPAGGDGEPGPRGQQGMFGQKGDEGSRGF
PGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPPGADGPQGPPGGIGGMGS
VGEKGEQGEAGNPGPPGEPGPGGPKGERGEKGEAGPPGAAGPPGPKGPPGDDGPKGNPGP
VGFPGDPGPPGEPGVAGIDGGPGEKGEDGESGQPGPPGPSGEAGPPGPPGKRGPPGAAGA
EGRQGEKGAKGEAGSEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAPGQDGP
PGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSAGSKGDSGI
SGAAGPIGPPGPPGLPGPQGPKGSKGSTGPAGQKGDTGSAGPPGPPGPPGEIIQPLPMHM
PKKSRRSIDMQADEAMMDYGEGMEDIFSSLNNLKQDIERMKYPMGTQNNPARSCKDLQLA
HPEFPDGEYYIDPNQGCSGDSFKVYCNFTAGGETCIFPDKKSNGVRISSWPKEVPGSWFS
EFKRGKILSYVDAEGNPINMVQMTFLKLLTASARQNLTYNCHQSVAWHDATTDNYDRALR
FLGSNDEEISFDNNPFITALSDGCAVRKGYGKTVLEINTPKIDQVPIIDVMFTDFGDPNQ
KFGFEVGPVCFLG
NT seq
5442 nt
NT seq
+upstream
nt +downstream
nt
atggagaggccaaggtggtccccaatgtggaaaacgaaaaggtggcttttggattccact
gttttcaaattcatcacagtttccctcgtcctggttctgcaggctccacatgtcagagca
gcagaacatgtggatgtccttaaagtattagaatttcccactgtcccagaaggagtacag
aaaacttcaggattttgcacaaaccgaagagcatcacagccagacacggcctacaaaata
ggcaagaatgcccagatcagtgccccaaccaagcagcttttcccagatggagtgttccct
gaagacttttccatcctaaccaccatcaagcccaaagctgggatccagtccttccttttg
tccatctacaacgagaaaggcgtccagcaactaggcgtcgagttgggccgctcacctctc
ttcctgtacgaggatcagacaggcaagcctgccccggaggattaccccctgttccgctct
ctcaacctggccgacggaaagtggcatcgtgtaggcatcagtgttgagaagaagactgtg
accatcgttgtcgactgcaagaagaagatgaccaagcccttgggcaggagtgaccatgcc
agtattgacaccaatggtataactgtttttggcaccaggatcctggatgaggaagctttt
gagggtgatatccaacaactgctgattgtggccgaccctaaagcggcttacgactactgt
gaacactacagcccagactgtgacgtcccccacaaggacacactgcaagcacaggagccc
gaggaggagtacacaactgctgttgaatatggtgatttatatgattattatgagggagcg
acccccacagcgacagaggaatattctgagccgcagcttaacaatgtagatggggagtac
tatgactacggaacagtagatgcttccaaaactcggtctcccatcgcaaccactggacca
aaccaggctgtggaagaggaagttttcggtgactatgtcactgagacggcccaggctggt
ctggatccgaccgctgccccggaggccgcgctgcccagcggcaccgccgaccccgtcgga
gtggatgcgtatgactttaaggagtatgatcttaaggaatatgatgtgactgggcttgac
aaaaatcagtatgagtacggggcgtacgatgagtttggcaatgcggctccgaaccctacg
tccacttatgaggacagttttgggccaggggtcgccgccgaaaccgacattgctgaaaca
gaagtgacgtcggatgtgggtggaggtgctgttctggggcagaaaggagagaaaggagag
cctgcagtgattgagccaggaatgctgattgagggacctgctggaccacctgggcctgct
ggtcttccaggccctccaggtttacaaggccctcctggttcggccggagatcctggtgac
aggggtcctcccggccgcgctggtcttcccggagcggatggcttgccagggccccctggt
actatgctgatgttgccattccgttttggcggtgatggggaaaagggtccagtggtgtcg
gctcaggaggcccaggctcaggctattctctctcaggccaggctggccatgagaggtcca
ccaggtccaatgggtctcaccggaagatctggcccagtgggtcttccaggtcctcctgga
ctgaagggagagggtggagaccctggccctcagggtccaaggggtatccaaggcccacca
gggcaaataggaaaacctggcaagagagggcgtgctggagccgatggggcccgtggaatg
cctggagaatctggatctaagggtgacagaggttttgatgggcttccaggtctgcctggt
gaaaagggacacaggggagagaatggtccccctggtccccctggacctactggagaggac
ggaccaagaggagaagatggagagattggaccaagaggacttgctggagagagcgggcca
cgaggtctgctcggccctagaggccctcctggacctcctggacaacctggcattgctggt
gttgatggtccacagggtcccaaaggaaacatgggaccccagggagagcccggcccgcct
ggacagcagggaatcccaggaacacagggtctcccaggtccgcagggcccaatcggaccg
cctggagaaaaaggtcctcagggaaggtctggtttgcctggattgcctggcgcagatgga
cctcctggacatccaggtaaagagggtccacctggagagaaaggagctttgggccagcct
ggtccccagggccccatcggctatcctggccctcgcggtgtgaagggtgctgatggagtt
cgtggtctgaagggaggcaaaggagagaagggtgaggacggtttcccgggtttcaaggga
gacatgggtctcaaaggcgacaggggtgaacttggattggctggacccagaggtgaggat
ggaccggagggcccgaagggtcgtgcgggccccaacggcgaacctggacccctgggacca
gctggagaaaagggtaaacttggtgttccaggattgcctggctatccaggacgtcaaggg
ccaaagggttcgactggtttccccggattcccaggagccaatggagagaaaggaggcagg
ggggtggcagggaaacccggtccaagagggcaaagaggtccgacgggcccccgtggcgca
cgcggtgccagaggcccaacaggaaaaccaggccctaagggcacagcgggcaacgacggt
ccacctggcccacccggagagagaggacctcaagggccccagggtcccgttggtttccca
ggaccaaagggcccccctggaccacctggaaaggatgggctgcccggtcaccctggtcag
cggggagaaactggtttccaaggcaaaactggcccgccaggacctggaggcgttgttgga
ccacagggtccaacaggagaaaccggccctattggtgagagaggacatcctggaccccct
ggtcctcccggagagcaaggtctcccaggtgctggtggaaaagaaggtgcaaagggagat
ccaggtcctcagggcagtccaggaaaagacggtcctccgggactgagagggttccccgga
gaaagaggtcttcccggagtgacgggtccacctggtttgaaaggagctgagggccctcag
ggcccccctggccctgttggttcccctggtgagagaggagcagcaggacctgctggcccc
attggcttgtctggacgtactggtcctcagggacccccaggacctgctggagagaagggt
gcaccgggagagagaggtcctccgggtccagccggtcgggatggagttcaaggtccagtc
ggtctgccgggtccagcaggacctcagggtccacctggagaagatggtgacaagggagaa
gtgggcgaaccaggacagaagggaagtaaaggcgacaaaggtgaacagggtcccccaggt
ccacctggtcttcagggaactattggagctcctggacctgctggaggtgatggtgaacca
ggtcctcgtggacagcagggtatgtttggacagaagggagatgaaggatcccggggcttc
cctggacctcctggtcccatcggtctgcagggtcttcctggaccacctggtgagaaagga
gaaaatggagacgttggtcccatgggtccccctggcccacctggtcccagaggtcctcag
ggtcctcctggtgctgatggtccacaaggtccccctggtggaataggaggaatgggatca
gtgggtgagaagggtgaacaaggagaagctggcaaccctggacctcctggcgagcctgga
cctgggggcccaaaaggtgagagaggagagaaaggtgaagctggtccccctggtgctgct
ggacctccgggtcccaaaggaccccctggagatgatggacccaagggtaaccctggccct
gttggttttcctggagaccctggtccacctggtgagccaggtgttgctggaatagatgga
ggcccaggagaaaaaggagaggatggagagtctggtcaacctggacctcctggtccttct
ggagaagctggcccaccaggacctcctggcaaaagaggacccccgggggctgccggagct
gaaggcagacaaggagagaagggcgccaagggtgaggcagggtccgagggtccaccaggt
aaaactggaccagttggccctcagggtcccgctggaaagcctggtcctgaaggtctacga
ggaatccctggtcctgtgggtgaacaaggacttcctggtgctcctggacaagacggccct
cctggaccaatgggacctcctggtctccctggcctgaaaggagaccctggatctaagggt
gagaagggtcaccccggtcttatcggcctcatcggaccccccggtgagcagggagagaag
ggagatcgtggtttgcctggtcctcagggctctgctggcagcaagggagattctggtatc
agcggtgctgctggtccgattggtccacctggtcctcctggattgcctggtccacaaggg
ccaaagggatccaagggttcgactggtcccgccggtcaaaagggagacactggctcggcc
ggacctcctggtcctcctggtcctcctggtgagatcatccagcctctgcctatgcacatg
cccaagaagtcccgtcgttccatcgacatgcaagcggacgaggccatgatggactacgga
gagggcatggaggacatcttcagctctttgaataatctcaaacaggacattgagcgaatg
aagtaccccatgggcacgcaaaacaaccccgcacgcagctgtaaagaccttcagctcgct
cacccagaattcccagatggtgaatactacatcgatcccaaccagggatgctccggggac
tccttcaaagtgtactgcaacttcacagcgggaggcgagacctgcatcttccctgataaa
aagtcaaatggagtgagaatatcctcatggcccaaagaagttcccggctcctggttcagt
gaatttaagcgtggcaaaatactttcgtacgtggacgcagaaggcaacccgataaacatg
gtccagatgacgttcctcaaactactgacagcctccgccaggcaaaacctgacctacaac
tgccaccaatcggtcgcctggcacgacgccactacggacaactatgacagggcactacgc
ttccttggctccaatgacgaggagatatcatttgacaacaaccccttcatcacggccctg
tcagacggctgtgcggtgaggaagggctacggaaagacggttctggagattaacactccc
aaaatcgatcaggttccgatcatcgatgtgatgttcactgactttggggatcccaaccag
aaatttggattcgaagttggtccagtctgcttccttggctaa
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integrated database retrieval system
