Mesorhizobium amorphae: A6B35_04445
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Entry
A6B35_04445 CDS
T04446
Name
(GenBank) DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mamo
Mesorhizobium amorphae
Pathway
mamo03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mamo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
A6B35_04445
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mamo03400
]
A6B35_04445
Enzymes [BR:
mamo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
A6B35_04445
DNA repair and recombination proteins [BR:
mamo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
A6B35_04445
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
ANT49238
UniProt:
G6Y5E4
LinkDB
All DBs
Position
complement(929522..932047)
Genome browser
AA seq
841 aa
AA seq
DB search
MAGLEQYQAKRDFRKTTEPAGKVSRAGKTAGGIFVIHKHAATRLHYDLRLEHDGVLWSWA
VTRGPSLDPHEKRLAVHVEDHPIDYAPFEGTIPKGEYGGGSVIVWDEGKWVPEMDPAKAM
KKGHIGFELKGHKLHGRWHLVRLKPRSGEKRDNWLLIKSDDAAARPGEDILKDAPKSVKS
GLTVEEVGAGKTAKGKKAEVWHSNRPAAGKPKAGHAKRLGFIEPSLATLQKNAPSGEEWL
HEVKFDGYRMQAQLAGSEVRLLTRAGLDWTGKFDGPVTAALASLKCRDAIVDGEVVVLAD
SGVSSFALLQADLSARRTDRFVYYVFDLMRLNGQDLRREPLVERKQALAELLGEQSEQSA
LRFSDHFAEPGKVMLQHVCRMGLEGVVSKRADAPYRSGRGLTWVKSKCTLRQEFVIGGYL
PSDKTGRGLRSLLVGYHEGGKLHYAGRVGTGFSGKVAADLKKRLDGLKAKTSPFSAAVPK
GKGLVWVEPELVGEVEFRSWTSDRMIRHASFQGLREDKPPEEVVQEKPKQATGKAGSNSK
ADGTKAAPRATSAGAVKTSVKLSHPDKLLWPDEKVSKQGLLDHYALVWPRMEQFVVSRPL
SLVRAPDGIGGPRFFQKHASAGMHDKILRMKDPMDGEEILFIRDFDGLAALVQYGVVEVH
IWGCTVEELEKPDQIIFDLDPDEGVGVKAVREAALDIHVRLDELSLPNLVKTSGGKGYHV
VVPLKPSADWDEAKTFAHDFARALEQAAPDRYTATLSKKARTGKIFVDYLRNGRGSTTVT
PYSSRAKKGATVSMPVTWAEIEAGLAPNAFAVGDKATLKRLAEADPWKDFFKLGKPLKRA
L
NT seq
2526 nt
NT seq
+upstream
nt +downstream
nt
atggccggcctcgaacagtaccaagccaagcgcgacttccggaaaaccaccgagccggcg
ggcaaggtctcgcgggccgggaaaacggccggcggtatcttcgtcatccacaagcatgcg
gcgacaaggctgcactacgatctgcgcctcgagcatgacggcgtgttgtggagctgggcg
gtgacgcgcggcccgagcctcgatccgcatgagaaacggctggccgtgcatgtcgaggac
catccgatcgactatgcgccgttcgaaggcaccattcccaagggcgagtatggcggcggt
tccgtcatcgtctgggacgagggcaaatgggtgcccgagatggatccggccaaggcgatg
aagaagggccatatcggcttcgagctgaagggccacaaattgcatggccgctggcatctc
gtcaggctgaagcctcgctccggcgaaaagcgcgacaactggctgctgatcaagtccgac
gatgccgccgcgcgccccggcgaggacattctgaaagacgcgccgaaatcggtgaagtcg
ggcctgacggtcgaggaggtgggcgcgggcaagacggcgaaaggaaagaaggccgaggtc
tggcattccaacaggccggctgctggcaagcctaaagccggtcacgccaagcgcctcggc
ttcattgaaccaagcctcgccactctgcagaagaacgcgccttccggtgaggagtggttg
catgaagtgaagttcgacggctatcgcatgcaggcccaacttgccggcagcgaggtcagg
ctgctgacccgcgccggtctcgactggaccgggaaattcgacggcccggtcaccgccgcg
cttgccagcctgaagtgccgggatgccatcgtcgatggcgaggtcgtcgtgctcgccgac
agcggcgtctcgtctttcgccctgctgcaggcggacctgtcggcccgccggacggatcgc
ttcgtctactatgtcttcgacctgatgcggctcaacggccaggatctgcgccgcgagccg
ctggtcgaacgcaagcaggccctggcggaactgctcggcgagcagtccgagcaatcggcg
ctgcgcttcagtgaccatttcgccgaaccgggcaaggtcatgctgcagcatgtctgccgg
atgggcctggaaggcgtcgtttccaaacgcgccgatgcgccttaccgcagcggccgcggt
ctgacctgggtgaagtcgaaatgcacgctgcgccaggaattcgtcatcggcggctatctg
ccatccgacaagaccggacgtggcctgcgctcgctgctggttggttatcatgaaggcggc
aagctgcactacgccggccgcgtcggcaccggtttctccggcaaggtggccgcggatctg
aagaagcggctcgacggcctcaaggcaaaaacctcgcctttctccgccgccgtgccgaaa
ggcaagggactggtctgggtcgagcccgaactcgtcggcgaagtggagttccgcagttgg
acatccgaccgtatgatccgccacgcctcgttccagggattgcgtgaggacaagccgccg
gaggaagtcgtgcaggaaaagccgaagcaagccaccggcaaggccgggagcaactcgaaa
gcggatggcaccaaggcggccccgagggccacttcggccggagccgtgaagacctcggtg
aagctttcgcaccccgacaagctgctgtggcccgacgagaaggtttccaagcaaggtctg
ctcgatcactacgcgctggtctggccgcgcatggaacaattcgtcgtcagccggccgctc
agcctggtgcgggcgccggacggcatcggggggccacgcttcttccagaagcacgcttcc
gccggcatgcacgacaagatcttgaggatgaaggatccgatggacggcgaggagatcttg
ttcatccgggatttcgacggcctcgccgcgctggtccagtacggcgttgtcgaggtccac
atctggggctgcaccgtcgaggaactggagaagccggaccagatcatcttcgatctcgat
ccggatgaaggtgtcggcgtcaaggccgtgcgtgaggccgcactcgacatccacgtccgg
ctcgacgaactgtccttgccgaacctcgtcaagacgtccggcggcaagggctaccatgtc
gtcgtaccgctgaaaccctcggcggattgggacgaggcgaagaccttcgcccatgatttc
gcccgcgcgctggaacaggccgcacccgaccgctacacggcgacgctgtcgaagaaggcg
cgcaccggaaaaatcttcgtcgactatctgcgcaatggccgcggctcgacgacggtcacg
ccctattcgtcgcgggccaagaagggcgcgacggtgtcgatgccggtgacctgggcggag
atcgaggccgggctggcgccgaacgcttttgcggtcggcgacaaggcgacgctgaagcga
ctggcggaagccgacccatggaaggatttcttcaagcttggtaagccactcaagcgggca
ctatga
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