Marinobacter sp. NP-4(2019): EHN06_09455
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Entry
EHN06_09455 CDS
T09527
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
manp
Marinobacter sp. NP-4(2019)
Pathway
manp03030
DNA replication
manp03410
Base excision repair
manp03420
Nucleotide excision repair
manp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
manp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EHN06_09455 (ligA)
03410 Base excision repair
EHN06_09455 (ligA)
03420 Nucleotide excision repair
EHN06_09455 (ligA)
03430 Mismatch repair
EHN06_09455 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
manp03032
]
EHN06_09455 (ligA)
03400 DNA repair and recombination proteins [BR:
manp03400
]
EHN06_09455 (ligA)
Enzymes [BR:
manp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
EHN06_09455 (ligA)
DNA replication proteins [BR:
manp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
EHN06_09455 (ligA)
DNA repair and recombination proteins [BR:
manp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
EHN06_09455 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
EHN06_09455 (ligA)
MMR (mismatch excision repair)
DNA ligase
EHN06_09455 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
EHN06_09455 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
HHH
PTCB-BRCT
5_3_exonuc
RNA_pol_A_CTD
Motif
Other DBs
NCBI-ProteinID:
AZT83750
UniProt:
A0A3Q9NJK0
LinkDB
All DBs
Position
2059903..2061930
Genome browser
AA seq
675 aa
AA seq
DB search
MSTATPETINRVQELRNIIDEHNYRYYVLDDPQVPDAEYDRLFRELQELEASHPELVTDD
SPTRRVGANVETSFEEVVHRVPMLSLDNAFNEEELRDFDRRVRDRLKTGDEIEYVCEPKL
DGLAVSLHYEKGVLTRAATRGDGYAGEDITANIRTIPSVPLKLRGSNLPEMVEVRGEVYM
PKAGFEKLNETLANQGDKTFVNPRNAAAGSLRQKKPSVTARRPLEMCAYSVAVTDESVLP
DTHWDCLQQVGQWGFRINPEMSKATGADECLAAYQALMDKRGELPYEIDGIVFKVNSLAL
QQALGFVSRAPRWAIAQKFPAQEELTVIEDVEFQVGRTGAVTPVARLKPVFVGGVTVSNA
TLHNMDEIRRLDARIGDTVFIRRAGDVIPQVVKVVLEKRPQDAREVELPKTCPVCDSDVI
QIEGEAVARCSGGLFCPAQRKEAIRHYASRKALDIEGLGDKWIDILVDRGMVKTVADLYG
LTKEDLTGLERMGDKSAANLLAAIDKSRHPVLWRFVYALGIREVGEATAKSLASHFGSLE
AISEADEEALQQVPDVGPIVAGHIRSFFDQPHNQETIASLKKAGVQWQTEEITAEERPLQ
GETWVLTGTLTEMTRDEAKERLEKLGAKVAGSVSKKTACVVAGEAAGSKLTKAESLGVRV
LDEDGFRALLESHGA
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atgagcacagcgactcccgagaccataaaccgggtacaggaactccgcaacatcatagat
gagcacaactatcgctattatgtgctggacgatccccaggtgccggatgccgaatacgac
cggctgttccgggagctccaggaactcgaggccagtcaccccgagctggtcaccgatgac
tcgcccacccgaagggtcggtgccaatgtagagaccagttttgaagaggtggtgcaccgg
gtacccatgttgtccctggacaacgcgttcaacgaggaagaactaagggattttgaccgt
cgggtgagggaccgccttaaaaccggggatgagatcgagtacgtctgtgaacccaagctc
gacggcctggccgtcagcctgcattacgagaagggcgtgctcacccgggcggccactcgg
ggcgatggttacgccggcgaggatatcacagccaacatccgtactattccgtccgtgccc
ctgaagcttcggggcagtaacctgcccgaaatggtggaagtccggggcgaggtgtacatg
cccaaagccgggttcgagaagttgaacgagacgctggccaatcagggcgataaaactttc
gtcaacccgcgtaatgccgcagctggcagcctcaggcagaaaaaaccgtcggtgaccgcg
cgtcggcccctggaaatgtgcgcgtacagtgttgccgttaccgacgaatcggtattgcct
gacacccattgggattgcctgcagcaggtcgggcagtggggcttccggatcaacccggaa
atgagtaaggctacaggcgcggacgaatgcctggcggcctaccaggcgctgatggacaaa
cgtggcgagttgccctatgaaattgacggtatcgtattcaaggtcaacagcctggcgctt
cagcaggcattgggttttgtctcccgcgcgccgcgttgggcgatcgcccagaaatttcct
gcccaggaagagcttacggttatcgaggatgtggagttccaggtcgggcggaccggtgcg
gtgacgccggtggctcgcctgaaaccggtctttgtgggtggtgtgacggtcagcaatgcc
accctgcacaatatggatgaaattcgtcgcctggacgcccggatcggggacacggtgttt
atccggcgcgccggtgatgtcattccccaggtcgtcaaggtggttttggagaaacggccg
caggacgctcgtgaggtagagttaccaaagacctgtcctgtttgcgattcggatgttatc
cagatcgaaggcgaagccgtggcccgttgctccggtggcctgttttgtcccgcacagcgc
aaggaagcgatccggcattatgcctcccgcaaggccctggatatcgaaggtctgggggat
aaatggatcgacatactggttgacaggggcatggtaaagaccgtggcggacctgtatgga
ctgaccaaggaagatctcaccgggttggagcgcatgggcgataagtccgcggccaacttg
ctggcggccattgataaatcacggcatccagtgctttggcgctttgtctacgcgttggga
atccgcgaagttggggaggcaactgcaaagtccctggccagccactttgggtccctggaa
gcgatcagcgaagcggacgaggaagcgctccagcaggttccggatgtcgggcccatcgtc
gccggccacattcgcagctttttcgaccagccccacaaccaggagaccattgcttccctg
aaaaaagcgggagtccagtggcagactgaagagatcaccgcggaggagcggccgcttcag
ggggaaacctgggtgttaaccggcactctcacggagatgacccgggacgaggctaaagag
cgtctggaaaaactgggtgccaaggttgccggcagtgtttccaaaaagaccgcgtgtgtc
gtcgccggagaggcagccggctccaaactgaccaaggccgagtcccttggggtcagggtg
ctggatgaagacggtttccgtgccctcctggaatcccacggcgcatag
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integrated database retrieval system
