Misgurnus anguillicaudatus (oriental weatherfish): 129423880
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Entry
129423880 CDS
T09481
Symbol
rad50
Name
(RefSeq) DNA repair protein RAD50 isoform X1
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
manu
Misgurnus anguillicaudatus (oriental weatherfish)
Pathway
manu03440
Homologous recombination
manu03450
Non-homologous end-joining
manu04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
manu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
129423880 (rad50)
03450 Non-homologous end-joining
129423880 (rad50)
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
129423880 (rad50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
manu03032
]
129423880 (rad50)
03400 DNA repair and recombination proteins [BR:
manu03400
]
129423880 (rad50)
DNA replication proteins [BR:
manu03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
129423880 (rad50)
DNA repair and recombination proteins [BR:
manu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
129423880 (rad50)
BRCA1-C complex
129423880 (rad50)
NHEJ (non-homologous end-joining)
MRX complex
129423880 (rad50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
AAA_21
SbcC_Walker_B
AAA_15
SMC_N
Intein_splicing
ABC_tran
AAA_29
AAA_22
zf-met
AAA_13
AAA_16
Motif
Other DBs
NCBI-GeneID:
129423880
NCBI-ProteinID:
XP_055036364
LinkDB
All DBs
Position
19:complement(15223156..15248052)
Genome browser
AA seq
1312 aa
AA seq
DB search
MSKIEKMSILGVRSFGVEDKDKQVISFFSPLTVLVGPNGAGKTTIIECLKYITSGDFPPG
SKGNTFVHDPKDAHETDVRAQIRLQFRDVNGEPMAVQRSMQSTQKGKKTEFKTLEGVITR
IKHGDKISVSSKCAEIDREMISSLGVSKAVLNHVIFCHQEESNWPLSEGKALKQKFDEIF
SATRYIKVLETLRQLRLKQANTVKMCQVELRYLKQDKDKAQEIKELLATKEAQLASSKET
VQRIESQIDPLENRLNDIDDSLSKVMKLDNDIKALESRKKQMEDDNRELEEKMEQVFQGS
DEQLQEMYQNHQHTVKEKERRLTECQRELERARRECERTNRIKSDLLVEQGRLQLEADRH
TQNIKKRDTQVKNLASVLELEGYDRTPLSERQLQSFHRQVKERLDQDTDALNQSMRDMQE
KEVQKQQNIDDLRDKKTGLERTIELKRDMQAKKQQELKNMKSDLQRLEGSSSRLQELETE
LQKAERELDNAMQACTVDSLKAEVIELQKEKSGLDQAQRKLDQEMEALNTHTTARTQMDM
LKKDKMDKEEQVRKIKSRHNEDLTSLIGHFPNKRQLEDWIYSKSKEINSTRDRLSKLNKE
LASGEQKKSHLTAEIKRKEEQLSNYEEKLFNVCGSQDFQSDLSRLQDELEKCNKQRAMLA
GATAVYSQFISQLTEEGEPCCPVCQRVFPSEAELQDVINDMQSKLRLVPDKLKNTEQDLK
RKERKRDDMMALKPIRQSIVELQEKELPELRNKLQSSNRDIERLKGDIEDQETRLSTLMS
EEDTAKACLQDISLMDRYQLDLKDVERKIAQHAAKLQGVDLSRSMQQVSQEKQETQHRLD
TICSKIDLKRKLIQDQQEQIQVLRSNMNEIRGEKLQISSDMQKRQQLEEQCVEFSTEIQT
LHRDIREAKEQLSPLAVTLEKLQQEKQELGERRRQKQEEGQEKINAIKEKVRNLALIERE
ITRYIEEGKDGYKEQKETELQEVEKQLHEAEKQREKINKDMGNLRQDIDTQKVQERWLQD
NLTLRKRVEELKEVSRKREVLLKEMGNMQVLQLRNERREVERKLEDLKKTRSVALGRQRG
YEDEIMRFRKELSEDKYCRAEDSYRDKMIVMRTTELANKDLDIYYKALDQTIMKFHSMKM
EEINKIIRDLWRSTYRGQDIEYVEIRSDVDENASAGVKRRTYNYRVVMVKGDAALDMRGR
CSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRENIESLAHALVEIIKSRSRQR
NFQLLVITHDEDFVELLGRSNYVEHFYRIKKNKDQCSEIIKCSISTLNTYLH
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaaattgaaaagatgagtattctgggagtgaggagttttggagtggaagataaa
gacaaacaagtgatatcattcttcagtcctctgactgtactggtgggacctaatggcgct
ggaaagacgaccatcattgagtgtctcaagtacatcacttcaggagactttcctccagga
agtaaaggaaacacatttgtccatgatccaaaagatgcccatgaaacggacgtgcgagct
cagatcagacttcagtttagagatgtaaatggcgagcctatggctgtccagagatcaatg
caaagcacacagaagggcaagaaaactgagtttaaaacccttgaaggtgtcattaccaga
atcaagcatggagataaaataagtgtgagctctaaatgtgctgagattgaccgggagatg
atctcatcattgggtgtatcgaaagctgttctcaaccacgtcatcttctgtcaccaagag
gaatccaactggcctctgagtgaaggcaaagccctcaagcagaagtttgatgagatcttc
tcagccacaaggtacatcaaagttttggagacacttcggcagctgaggttaaagcaggca
aacacagttaaaatgtgtcaggtggagctcaggtacctgaaacaggataaagacaaggct
caggagatcaaagagctgctggcaactaaagaagctcagctagcttcctccaaagagact
gtccagcgaatcgaaagccaaatcgacccactagagaaccggctcaatgacatagatgac
agcctcagtaaagtgatgaagttggacaatgacatcaaagctctagagagcagaaagaaa
cagatggaggacgataaccgtgaactagaagaaaagatggagcaggtttttcagggctca
gatgaacagttacaggagatgtatcagaaccaccagcatactgtaaaggagaaagagcgg
aggctcactgagtgccagcgtgagctcgagcgagccagacgagaatgcgagagaacaaac
cgaatcaaatccgacctgctcgttgagcaaggtcgcctgcagttggaggcagataggcac
acacagaacataaaaaagagggacacccaggtgaagaatttggcatctgttctggagttg
gagggctatgatcggacccctctcagtgagagacagctccagagttttcacagacaggtc
aaagaaagattggaccaggacacagatgccctcaaccaaagcatgcgtgatatgcaagag
aaagaggtgcaaaagcagcaaaacattgatgatcttcgcgataagaagactggcctggag
agaactattgagctgaaaagagacatgcaggcgaagaagcagcaggaactgaagaacatg
aagtctgatctgcagagattagagggctcatctagtagactgcaagagctggagactgaa
cttcagaaagcggagcgtgagcttgataacgccatgcaggcgtgtacagtggacagtctg
aaggctgaagttattgaactgcagaaggaaaaatctggactggatcaggcccagcgtaaa
ctggaccaggagatggaagcgcttaacacgcacaccacggcacgtacacagatggacatg
ctgaagaaggataagatggataaagaggaacaggtgagaaagatcaagtcaagacacaat
gaagatcttacgtctctgataggacactttccaaacaagagacaactggaggactggatc
tactcaaaatccaaagagatcaactctacgagagatcggctcagtaagctcaacaaagag
ctggcatctggtgagcagaagaagagccacctcacagcagagatcaagcgtaaggaagag
cagctgagcaactatgaggagaagctgtttaatgtgtgtggaagtcaagactttcagtca
gacctcagcagactgcaggatgagttagagaaatgcaacaaacagagagccatgctggca
ggtgccacagccgtgtacagtcagtttatcagccaactgactgaggagggcgagccatgc
tgtcccgtgtgtcagcgcgtcttcccatcagaggccgagctccaggacgtcatcaacgac
atgcagtccaaactgcgcctcgtcccggataaactgaagaacactgagcaagacctaaag
aggaaagagcggaagcgggatgacatgatggctcttaagcccatcagacagtccatagtg
gagcttcaagagaaagagctgccagagctcaggaacaaactccagagttccaatcgagac
atcgagaggctaaagggagacatagaggaccaagagacacggctgtccacccttatgtcc
gaggaggacacagctaaggcctgtctgcaggacatctccctcatggaccgctaccagctt
gacctgaaggatgtggagaggaagatcgctcagcatgcagccaaactgcagggagtcgat
ctcagtcgcagcatgcagcaggtcagccaggagaaacaagagacccaacaccgtctggac
accatttgcagtaagatcgacctaaagaggaaactgatccaggaccagcaggagcagatc
caggtcttgaggagcaacatgaatgagatccgcggagaaaagctgcagatctccagtgac
atgcaaaaacgtcagcagctggaagagcagtgtgttgagttttccaccgagatccagaca
ctccatcgagacattcgggaggcaaaggagcagctgtctccactagctgtgactctggag
aaactccaacaggaaaaacaggagctgggggagcgcaggagacagaaacaagaggaagga
caggagaagataaatgcgatcaaggagaaagttagaaacctggctctaatcgaaagagag
atcactcggtacattgaagagggcaaagacggctataaagagcaaaaagaaaccgagcta
caggaggtggaaaaacagctacatgaggctgaaaaacaacgagagaagatcaataaggac
atgggcaaccttcggcaagacattgacactcagaaggttcaggagcgctggctccaggat
aacctgaccttacggaagcgcgtggaagagctaaaggaggtgtcccggaaacgcgaggtg
ttgctgaaagagatgggaaacatgcaggtcttgcaattgcgcaatgagcgtcgagaagtg
gagagaaagttggaggatctcaaaaagacccgcagcgtggctctcggccggcagaggggc
tacgaggacgagatcatgcgtttccgtaaggagctcagtgaggataagtactgtcgggct
gaggatagctacagagacaaaatgattgtcatgagaaccactgagttggctaataaggac
ctggatatatactacaaagccctagaccaaacaattatgaagtttcacagcatgaagatg
gaggagattaataaaatcattagagatttgtggaggagcacatacagaggacaagacatc
gagtatgtggagatacgctcagacgtggatgagaacgcctctgctggtgtaaaaagaagg
acatataactatagagtggtaatggtgaaaggagacgcagctttggacatgcggggacgc
tgcagtgcgggacaaaaggttcttgcctctctcataatacgactggctctggctgagact
ttctgtctgaactgtgggatcctggcactggatgagcccaccaccaatttagacagagag
aatatagagtctttggcacacgccctggtggagataatcaagagtcgctctcgtcagcgc
aacttccagctgctggtcatcacccatgatgaagattttgtggagctcttgggacgatcc
aactatgtggagcatttctacaggatcaagaagaacaaggaccagtgttcagagatcata
aagtgcagcatctccactcttaacacatacctgcactaa
DBGET
integrated database retrieval system
