Mycobacterium avium subsp. paratuberculosis MAP4: MAP4_4255
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Entry
MAP4_4255 CDS
T02662
Name
(GenBank) DNA-directed RNA polymerase beta chain RpoB
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
mao
Mycobacterium avium subsp. paratuberculosis MAP4
Pathway
mao03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mao00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MAP4_4255
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mao03021
]
MAP4_4255
03400 DNA repair and recombination proteins [BR:
mao03400
]
MAP4_4255
Enzymes [BR:
mao01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MAP4_4255
Transcription machinery [BR:
mao03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MAP4_4255
DNA repair and recombination proteins [BR:
mao03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MAP4_4255
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_45
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
Peptidase_M23
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
AGL39088
LinkDB
All DBs
Position
4602804..4606331
Genome browser
AA seq
1175 aa
AA seq
DB search
MLEGCILADFRQSKTDRPQSSSNGSSSLNGSVPGAPNRVSFAKLREPLEVPGLLDVQIDS
FEWLIGAPRWREAAIARGDAEPKGGLEEVLDELSPIEDFSGSMSLSFSDPRFDEVKAPVD
ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV
RSPGVYFDETIDKSTEKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA
LGWTNEQITERFGFSEIMMSTLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLF
FKEKRYDLARVGRYKVNKKLGLHAGEPITSSTLTEEDVVATIEYLVRLHEGQPTMTVPGG
IEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINI
RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY
GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVTDEIHYLTADEEDRHV
VAQANSPIDDKGRFAEARVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHD
DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEKSGVIEEVSADYITV
MADDGTRHTYRMRKFERSNHGTCANQSPIVDAGDRVEAGQVIADGPCTENGEMALGKNLL
VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV
LADLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVP
HGESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP
QEDMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKSGWNIDGNPEWAVNLPEEL
RHAQPNQIVSTPVFDGAKEEELAGMLSCTLPNRDGEVMVDGDGKAVLFDGRSGEPFPYPV
TVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAY
TLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGA
AIELREGEDEDLERAAANLGINLSRNESASVEDLA
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
gtgctggaaggatgcatcttggcagatttccgccagagcaagacggatcgcccacaaagt
tcctcaaacggatcaagttccttgaacggctccgtgcccggagcgcccaaccgagtttcc
ttcgccaagctgcgcgaaccgctcgaggttcccggcctgctggacgtgcagatcgactcc
ttcgagtggttgatcggcgcgccgcggtggcgtgaggccgcgatcgcccgcggcgacgcg
gagcccaagggcgggttggaagaggtgctcgacgagctgtcgccgatcgaggacttctcg
ggctcgatgtcgctgtctttctccgacccccgcttcgacgaggtcaaggcgccggtcgac
gagtgcaaagacaaggacatgacgtacgcggccccgctgttcgtcacggccgagttcatc
aacaacaacaccggcgagatcaagagccagacggtgttcatgggtgacttcccgatgatg
accgagaagggcaccttcatcatcaacgggaccgagcgcgtggtggtcagccagctggtc
cgctcgccgggcgtgtacttcgacgagaccatcgacaagtccaccgagaagacgctgcac
agcgtcaaggtgatccccagccgcggcgcctggctggagttcgacgtcgacaagcgcgac
accgtcggcgtgcgcatcgaccgcaagcgccgccagccggtcaccgtgctgctcaaggcg
ctgggttggaccaacgagcagatcaccgagcggttcggcttctccgagatcatgatgtcg
acgctggagaaggacaacaccgccggcaccgacgaggcgctgctggacatctaccgcaag
ctgcgcccgggcgagccgccgaccaaggagtccgcgcagaccctgctggagaacctgttc
ttcaaggagaagcgctacgacctggcccgggtgggccgctacaaggtcaacaagaagctc
ggcctgcacgccggtgagccgatcaccagctcgacgctgaccgaggaagacgtcgtcgcc
accatcgagtacctggtgcgcctgcacgagggtcagcccacgatgaccgtcccgggcggc
atcgaggtgccggtggagaccgacgacatcgaccacttcggcaaccgccggctgcgcacc
gtcggtgagctgatccagaaccagatccgggtcggcatgtcccggatggagcgcgtcgtc
cgcgagcggatgaccacccaggacgtcgaggccatcacgccgcagaccctgatcaacatc
cgtcccgtcgtggcggcgatcaaggagttcttcggcaccagccagttgtcccagttcatg
gaccagaacaacccgctgtcggggctcacccacaagcgccgcctgtcggcgctgggcccg
ggtggtctgtcccgggagcgggccgggctggaggtccgcgacgtgcacccgtcccactac
ggccggatgtgcccgatcgagaccccggagggtcccaacatcggtctgatcggctcgctg
tcggtgtacgcgcgggtcaacccgttcgggttcatcgagacgccgtaccgcaaggtggtc
gacggcgtggtcaccgacgagatccactacctgaccgccgacgaggaggaccgccacgtg
gtggcgcaggccaactcgccgatcgacgacaagggccggttcgccgaggcccgggtgctg
gtccgccgcaaggcgggcgaggtcgagtacgtgccctcgtccgaggtggactacatggac
gtgtcaccgcgccagatggtgtcggtggccaccgcgatgatcccgttcctcgagcacgac
gacgccaaccgtgccctgatgggcgccaacatgcagcgccaggcggttccgctggtgcgc
agcgaggcgccgctggtgggcaccggcatggagctgcgtgccgcgatcgacgccggcgac
gtcgtcgtcgccgagaagtccggggtgatcgaggaggtctccgccgactacatcaccgtg
atggccgacgacggcacccggcacacctaccggatgcgcaagttcgagcggtccaaccac
ggcacctgcgccaaccagagcccgatcgtcgacgccggcgaccgggtcgaggccggccag
gtcatcgccgacggtccgtgcaccgagaacggcgagatggcgctgggcaagaacctgctc
gtggcgatcatgccgtgggagggccacaactacgaggacgcgatcatcctctccaaccgg
ctggttgaggaggacgtgttgacgtccatccacatcgaggagcacgagatcgacgcccgc
gacaccaagctgggcgccgaggagatcacccgggacatcccgaacgtctccgacgaggtg
ctggccgacctggacgagcgcggcatcgtgcgcatcggcgccgaggtccgcgacggcgac
atcctggtcggcaaggtcaccccgaagggggagaccgagctgacgccggaggagcggctg
ctgcgcgccatcttcggcgagaaggcccgcgaggtccgcgacacctcgctgaaggtgccg
cacggcgagtccggcaaggtcatcggcatccgggtgttctcccgcgaggacgacgacgag
ctgcccgccggggtcaacgagctggtccgcgtctacgtggcccagaagcgcaagatctcc
gacggtgacaagctcgccggccggcacggcaacaagggcgtcatcggcaagatcctgccg
caggaggacatgccgttcctaccggacggcacgccggtggacatcatcctgaacacccac
ggtgtgccgcgacggatgaacatcggccagatcctggagacccacctggggtgggtggcc
aagtccggctggaacatcgacggcaatcccgagtgggcggtcaacctgcccgaggagctg
cggcacgcacagccgaaccagatcgtgtcgacaccggtgttcgacggcgccaaggaagag
gagctggccggcatgctgtcgtgcacgctgcccaaccgcgacggcgaggtcatggtggac
ggcgacggcaaggcggtgctgttcgacggccggtccggggagccgttcccgtacccggtg
accgtcggctacatgtacatcatgaagctgcaccacctggtggacgacaagatccacgcc
cgctccaccggcccgtactcgatgatcacccagcagccgctgggcggtaaggcgcagttc
ggtggccagcgcttcggtgagatggagtgctgggccatgcaggcctacggcgcggcgtac
acgctgcaggagctgttgaccatcaagtccgacgacacggtcggccgggtcaaggtgtac
gaggcgatcgtcaagggcgagaacatcccggagccgggtatccccgagtccttcaaggtg
ttgctcaaggagctgcagtcgctgtgcctcaacgtcgaggtgctctcctccgacggcgcg
gccatcgagctgcgcgaaggcgaggacgaggacctggagcgggccgcggcgaacctggga
atcaacttgtcccgcaacgaatccgcgtccgtcgaggacctggcttaa
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integrated database retrieval system
