Microbacterium arborescens: QUC20_06980
Help
Entry
QUC20_06980 CDS
T09423
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mark
Microbacterium arborescens
Pathway
mark03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mark00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
QUC20_06980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mark03400
]
QUC20_06980
Enzymes [BR:
mark01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
QUC20_06980
DNA repair and recombination proteins [BR:
mark03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
QUC20_06980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
LigD_N
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
WJM17040
LinkDB
All DBs
Position
complement(1475103..1477577)
Genome browser
AA seq
824 aa
AA seq
DB search
MAGEQTVQVDGRRLRLSNLDKVLYPRTGTTKGEVIDYFSRIAPLMLPHLDRRPVTRKRWP
EGVDQPDFFAKDLERGAPSWLPRMPIDHSTGAKDYPLVEEVAALVYLAQVASLELHVPQW
RFTDAGERGAPDRLVLDLDPGPGVGLAECAEVARWVRSILSDMGMELFPVTSGSKGIHLY
APLAAAQTSEQASAFAKELARALEADHPDLVISQMNRSARAGKVFLDWSQNNGSKTTIAP
YSLRGRDEPTVAAPRTWDELEDPSLRHLRFDEVLERAVDLGDPLAPLAPRRTAPLAPYLA
KRSAERTPEPMPDAVSVAAGGVSGAGAADRPRFVIQEHHARRLHYDLRLERDGVLVSWAV
PRGIPETTERNHLAVMTEPHPMEYLSFHGEIPPGEYGAGTMTIWDTGVYDLEKWRDDEII
ITLHGTPGGAASDARLVLIRTGGSGEKSQWLLHRMKTEAASAKPGATPSAASGRSGPEAG
PEAEPEAEAEADDTASGPASLPAPMLAVSSSPGTARATAERWGPWVEFKWDGVRAIAHWD
GERMRLRARSGTDITSRYPELTGDDADLGLGDTPLVLDGEIVALDESGRPSFPLLQNRMH
LTKARDIARERDRTPADFFVFDLLQHGDRDVTALPLRERRRLLESAVRDAKPPLTVPPVT
DDLDAALATARELDLEGAVVKDPSSRYRVGVRSDEWLKVKLTRTQDVVVGAIRPGKGSRR
GGIGSLLLGIPDDDGSLQYAGRVGSGFSDAELARLTAALDPLRTDENPFVGIPAADASDA
LWVRPELVGEVEFAEFTPGGILRHARWRGLRPDREPGDVRRDEG
NT seq
2475 nt
NT seq
+upstream
nt +downstream
nt
atggcaggagagcagacggtgcaggtcgacggccgccggctgcgcctgtcgaacctcgac
aaggtgctctacccgcggaccgggacgacgaagggcgaggtgatcgactacttctcgcgc
atcgcgcccttgatgctgccgcacctcgaccggcgtccggtgacgcgcaagcgctggccc
gagggcgtcgaccagcccgacttcttcgcgaaagacctcgaacgcggcgccccctcgtgg
ctcccccgcatgcccatcgaccactccaccggcgcgaaggactatccgctcgtcgaggag
gtggcggcgctggtctacctcgcacaggtcgcgagcctcgaactgcacgtcccccagtgg
cgcttcaccgacgcgggcgagcgcggtgcacccgaccgactcgtcctcgatctcgatccg
gggccgggagtcggcctggccgaatgcgccgaggtcgcgcggtgggtgcgcagcatcctg
tcggacatgggaatggagctgtttcccgtgacgagcggcagtaagggcatccatctgtat
gccccgctcgccgccgcgcagacgagcgaacaggcctcggctttcgcgaaagagctcgcc
cgggccctggaggccgaccaccccgacctcgtcatcagtcagatgaaccgcagcgcccgc
gccggcaaggtcttcctcgactggagccagaacaacggctcgaagaccaccatcgcgccc
tactcgctccgcgggcgagacgaacccacggtcgctgcaccacgcacatgggacgagctc
gaagacccgtcccttcgtcacctgcgcttcgacgaggttctcgagcgcgccgtcgacctc
ggcgacccactggcgccgctcgcgccccgtcgcaccgcgccgctagcgccctacctcgcg
aaaaggtcggcggagcgaacacccgagcccatgcccgacgccgtgtcggtcgcggcaggc
ggtgtctccggcgccggtgccgcagacaggccgaggttcgtcatccaggagcatcacgcg
cgacgcctgcactacgacctgcgcctggaacgggacggcgtgctggtcagctgggcggtg
ccccgcggcatccccgagacgaccgagcgcaatcatctcgccgtgatgaccgaaccccac
cccatggaatacctgagcttccacggcgagattccccccggcgagtacggcgcgggaacg
atgacgatctgggacaccggcgtctacgacctcgagaagtggcgtgacgacgagatcatc
atcacactccacggcacgcccggcggagccgcttccgacgctcgcctcgttcttatccgc
accggcggatcgggtgagaagtcgcagtggctgctgcaccggatgaagacggaggctgcc
agcgcgaagccgggcgccacgccgtctgcggcatccggcaggtccggccccgaggccggg
cccgaagccgaacccgaagccgaagccgaagccgatgacacggcatcgggcccggccagc
ctgccggctcccatgctggccgtctcgtcatctccgggaaccgcgcgagcgacggcggag
cggtgggggccgtgggtcgagttcaaatgggacggtgttcgggcgatcgcgcactgggac
ggcgagcggatgcggctgcgcgcgcgcagcggcaccgacatcacgtcccgctatcccgaa
ctcacgggcgacgacgcggatctcggactcggtgacacacctctcgtgctcgacggtgag
atcgtcgcgcttgacgagtccggacgtccgagctttcctctcctgcagaaccgcatgcac
ctgaccaaggcgcgcgacatcgcccgagagcgcgaccgcacacccgcggacttcttcgtc
ttcgacctgctgcagcacggcgaccgcgatgtgaccgcactgccgctgcgcgagcgtcgt
cggctccttgagtccgcggtcagggacgcgaagccgccgctcacggtgccacccgtgacc
gacgacctcgacgctgcgctggccaccgcccgcgaactcgacctcgagggcgccgtcgtg
aaagacccgtcgtcccggtatcgggtcggtgtccgctccgacgagtggctcaaggtcaag
ctcactcggacgcaggacgtcgtcgtcggcgccatccgaccaggcaagggctcgcgccga
ggcggcatcggctctctgctgctgggcattcccgacgacgacggctcgctgcagtacgcc
ggtcgcgtcggctcggggttctccgacgccgaactcgcccggctcaccgcagccctcgac
ccgctccgcaccgacgagaacccgttcgtcggaatccccgcggccgacgcctccgacgcc
ctgtgggtgcggcccgagctcgtcggagaggtcgagttcgccgagttcacgcccggcggc
atcctgcgccacgcccggtggcggggcctccgccccgatcgcgagccgggcgacgtccgc
cgcgacgagggctag
DBGET
integrated database retrieval system
