Maribacter sp. 1_2014MBL_MicDiv: YQ22_16380
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Entry
YQ22_16380 CDS
T04570
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
marm
Maribacter sp. 1_2014MBL_MicDiv
Pathway
marm03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
marm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
YQ22_16380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
marm03400
]
YQ22_16380
Enzymes [BR:
marm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
YQ22_16380
DNA repair and recombination proteins [BR:
marm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
YQ22_16380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
RNA_ligase
DNA_primase_S
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
APA65747
LinkDB
All DBs
Position
complement(3903327..3905744)
Genome browser
AA seq
805 aa
AA seq
DB search
MSLKQYYDKRNFEKTPEPKGELQPVSNNQRFVIQRHAASRLHYDLRLEINGTLKSWAIPK
GPSMNPTDKRLAVRTEDHPLEYLTFHGTIPKGNYGAGHMIIWDTGTFEVDTKETDKELSE
QLAIGNIKLNFYGSKIRGRFALVRTTSKNDTEQWLLLKKKDEYAITTFYDAETLVPISTT
RKKKFTTQLKPGSILQPMLASSTKDIFNDPNYIFELKWDGYRVIAHITKGRVLLQSRNGI
NYNIKFSKLHDELATIEHDVILDGEVVLVDSNGVSQFGELQNYPDSTGELRYYVFDMLYL
NGHSMLDLKLIERKSLINDVIGDLTITQYCDHIEGMGTALFEKAIEAGMEGVMAKEQNSN
YAVGSRTEKWLKVKGVQSTDAIICGFTESANSPELIGSLILGQYQQDKLKYIGNCGTGFT
DKSRKELQLLLSKYEVNENVFENKITLKGRIPHWTQPILECEIIFSELTKNGLLRNPVLK
RIKSEITKIPIEPKNTEVSIKKSTSSKEFITIDGLKVPISNLDKIYWPESKITKFNLIDY
YLNISDYLLPHLIDRPQNLHRHPNGIHQESFYQKDNDYLPDWFETVLVYSKSSEREINYL
MCQNTASLIYMANLGCIEINPWSSRKLSLDKPDYGIIDLDPPKNMAFKKVVEVAKEFHKI
LRNLNIESFCKLSGSKGIHIYLPMSTKYSYEEVRNFIKLLCLLVEERLPELTTLERSINK
RKGRIYLDYLQNRRGHTIASVHSVRPIVEAPISAPLHWQELNNKLTPRHFKMKDYITRIK
EQGDLFKKISEVNFDMNNALMQIDK
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
gtgagcttaaaacagtattatgataagcggaattttgagaaaacccccgagcctaaaggg
gaattacagcctgtttccaacaaccaaagatttgtaattcagcgccatgcggcaagtaga
ttacattatgaccttaggttagaaatcaacggaacactcaaaagttgggcaatacctaaa
ggaccttcaatgaatccgacagataaacgcttggctgtgcgtactgaagatcatccacta
gaatacctgacttttcacggcacaataccaaagggaaattacggtgcaggccatatgatt
atttgggatacgggaacttttgaggtggataccaaggaaacggataaagaactatccgaa
caactggcaataggcaatatcaaattgaatttttacgggagtaaaattagaggacgtttt
gcattagttcgtaccacttcaaaaaacgataccgaacaatggttactgcttaaaaagaaa
gatgaatatgccattaccactttttatgatgctgaaacattggttcctatttctacaaca
cgaaaaaagaaatttaccacacaacttaaaccgggatccatattacagcccatgctggca
tcttccactaaagatatattcaatgacccaaattatatttttgaacttaaatgggatggc
tatagggttatagcacacattacaaaaggtagggtactcttacagtcaaggaatggtatc
aactataacatcaaattttccaaacttcatgatgaattagccactattgaacacgatgtt
attttagatggtgaagtagttctggtggatagcaatggcgtatcgcaatttggtgaactt
caaaattaccctgacagtacgggagaattacggtattatgtttttgacatgctttacctg
aacggtcatagcatgctggacctaaaattgatagagcgaaaaagtcttatcaatgatgtt
ataggtgatttgactataacgcaatactgtgaccatattgaaggtatgggtaccgcactt
tttgaaaaagctattgaagcgggtatggaaggtgtaatggccaaagagcaaaattccaat
tacgctgttggatccagaacagaaaaatggttaaaagtcaagggcgttcaaagtacagat
gctatcatctgtggttttaccgaatccgctaatagtccagaattgatcggctctttaatt
cttggtcaatatcaacaggacaaattaaaatatatcggcaattgtggtacaggctttacc
gataaaagccgtaaagaattacaattacttctttctaaatatgaggtgaacgaaaatgtg
tttgaaaataaaataacattaaaaggtagaataccacactggacacaacctatattggaa
tgtgagattatattctctgaactcacaaagaacggattgttaagaaatcctgttttaaaa
cgtattaaaagtgaaattactaaaataccaattgaaccaaaaaataccgaggtgagcatt
aaaaaatcaacatcctcaaaagagtttattactattgacggattaaaagtgcccattagt
aatctagataaaatatattggccagaatcaaaaattaccaagttcaacctgattgattat
tatttgaatatatctgattacctactaccccatttgatcgatcgtccccaaaatttacat
cgtcatccaaatggtatacatcaagaaagtttttatcagaaggataatgattacttgccc
gattggtttgagacggtattagtatactccaaatcttctgaacgcgaaataaattaccta
atgtgccaaaataccgcgtcattaatttatatggccaatttagggtgcattgaaattaat
ccgtggagttctagaaaattgagcttggacaagcccgattacggcattattgatttagat
ccaccaaagaatatggcatttaaaaaagtggttgaagtagcaaaagagttccataaaata
ttaagaaatctaaatattgaaagtttttgcaagctatctggatctaaaggcattcatatt
tacctacccatgtctaccaaatacagttatgaggaagtccgaaattttattaaactttta
tgtctattggtggaagaaagactaccagaattgaccactttagaacgtagtataaacaaa
cgaaaaggtaggatatatttagactatttacagaaccgtagaggtcacaccattgcatcg
gtccactcggtaagaccaattgtggaagcaccaatttctgccccattacattggcaagaa
ttaaataataaattaacccctagacattttaaaatgaaagattatataacaagaattaaa
gagcaaggcgacttgttcaaaaaaatttcagaggttaattttgacatgaataacgcactt
atgcaaatagataaataa
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