Myxocyprinus asiaticus (Chinese sucker): 127423134
Help
Entry
127423134 CDS
T08782
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1 isoform X1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
masi
Myxocyprinus asiaticus (Chinese sucker)
Pathway
masi03020
RNA polymerase
masi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
masi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
127423134
09124 Replication and repair
03420 Nucleotide excision repair
127423134
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
masi03021
]
127423134
03400 DNA repair and recombination proteins [BR:
masi03400
]
127423134
Enzymes [BR:
masi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
127423134
Transcription machinery [BR:
masi03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
127423134
DNA repair and recombination proteins [BR:
masi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
127423134
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
127423134
NCBI-ProteinID:
XP_051523177
LinkDB
All DBs
Position
32:23453355..23469944
Genome browser
AA seq
1965 aa
AA seq
DB search
MHGPPSSDSACPLRLIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQ
GVIERSGKCQTCAGNMAECPGHFGHIELAKPVFHVGFITKIMKVLRCVCFFCSKLLVDAN
NPKIKDILIKSKGQPRKRLTHVYDLCKGKNICEGGEEMDNKFGVEQQETEEDITKEKGHG
GCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEEDVILGMDPKY
ARPEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQSGAAAHV
IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSIKQRLKGKEGRVRGNLMGKRVDFS
ARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD
NGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIVVFNRQPTLHKMSMMGHRVRILPWSTF
RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTL
TAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINA
IRTHSTHPDEEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGH
DITRLFYSNIQTVVNNWLLIEGHSIGIGDSIADKATYQDIQNTIKKAKQDVIEVIEKAHN
NELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINIS
QVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMG
GREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAAEAVE
FQNMATLKPSNKAFEKKFKFDYTNERALRRTLQEDVVKDVMTNAHVQSALEREFEKMRDD
REILRAIFPTGDSKVVLPCNLARMIWNAQKIFRINPRTPTDLNPARVVEGVQELSKKLVI
VNGDDQLSRQAQENATLLFNIHLRSTLSSKRMTEEFRLSTEAFDWLLGEIETKFNQSIAH
PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVF
LLGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVTEDQEWVNVYYEMPDF
DVTRISPWLLRIELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM
NSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIII
TEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL
YHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEA
SSHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGISVAGPTGMF
FGSAPSPMSGMSPAMTPWNTGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYS
PAWSPTPGSPGSPGPASPYIPSPGALSPNYSPTSPAYEPRSPGGYTPQSPGYSPTSPSYS
PTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP
SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP
TSPSYSPTSPNYTPTSPSYSPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPS
YSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPT
SPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPTSPTYSPTSPKY
SPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSPAISPDDSDEENN
NT seq
5898 nt
NT seq
+upstream
nt +downstream
nt
atgcacggaccgccttccagcgacagcgcatgcccattgcgcctcatcaagagagtgcaa
ttcggcgtcctcagccctgatgaacttaaacggatgtcagtcactgaagggggaatcaag
tatcccgagacaacagagggaggacgccctaaactgggtggtctcatggacccccggcaa
ggggtaattgaaagatccggcaaatgccagacatgtgcaggtaacatggcagaatgccct
ggtcattttggtcacattgagctggctaagccggtctttcatgttggcttcatcacaaag
atcatgaaggtcctccgctgtgtctgtttcttctgttctaagctgcttgtggacgcaaac
aatccaaaaatcaaagacatcttgatcaagtcgaaggggcaaccgcgaaagcggctgacc
cacgtctatgacctctgtaaaggcaaaaacatctgtgagggtggagaggagatggacaac
aagtttggagtggagcagcaggagactgaagaagacatcaccaaagagaagggacacgga
ggctgtggcaggtaccaaccacgtatccgccgctctggcctggagctgtatgcagagtgg
aagcacgtaaatgaagattcccaagagaagaagattcttctcagccctgaacgcgtgcat
gagatcttcaaacgcatttcagatgaggaggacgtgatccttggcatggaccccaaatat
gcccgtcctgagtggatgattgtaactgttttgcctgtgcccccacttgctgtgagaccc
gctgtggtcatgcaaggatctgctagaaatcaggatgatttgacacacaagttggctgac
attgtaaagatcaataaccagctccggcgaaatgagcagagtggagccgcagctcacgtt
atagcagaggatgtcaagctgcttcagttccatgtagccaccatggtggacaatgaactg
ccaggcctgccaagggcaatgcaaaagtctggtcgtccgctaaaatccatcaagcagagg
ctaaagggtaaggaaggacgtgtcagaggtaatctgatggggaagcgtgtagacttctct
gcccgaactgtcatcacacctgaccccaacctgcagatcgaccaggttggagttccccgt
tccattgctgcaaacatgacctttcctgagatcgtcacaccctttaatattgacagactc
caagaacttgtgaggagaggtaacagtcagtaccctggagccaaatatatcatccgtgac
aatggcgacagaattgacctgcgattccaccctaaaccaagtgaccttcaccttcagatt
ggatacaaagtcgaacgacacatgtgtgatggggacattgttgtgttcaacagacagccc
acgctgcacaaaatgtctatgatgggccatagagtacgaatcttgccttggtctacattt
agactcaacctgagtgttacaacgccgtacaatgctgactttgacggtgatgagatgaac
ctgcacttaccacagtctctggagacgcgtgctgaaatccaagagctggcaatggtgccc
cgtatgattgtcacaccacagtccaacagacccgtcatgggcattgtgcaggacacactc
acagctgtgcgcaagttcaccaagagagatgtcttcttagagaggggcgaggtgatgaac
ctcctgatgtttctctcaacatgggatggtaaagtgccccaaccagctatcttgaagcct
cggcctctctggacaggaaaacagatcttcagcttgatcattcctggacacattaatgcc
atccgcacacacagcacccaccctgatgaagaggacagtggtccttataagcacatctcc
cctggagataccaaggtaattgtggaaaacggtgaactgatcatggggattctgtgtaag
aagtctctaggaacttcagcgggctctctggtccatatctcgtaccttgagatgggccat
gacatcacacgactcttctattccaacatccagactgttgtcaacaactggctgctcatt
gagggtcactctattggtattggagactccattgctgataaggcgacatatcaggacatt
cagaacactattaagaaagccaaacaggatgtgatagaggtcattgagaaagctcacaat
aatgagttggagcctacaccaggtaacactctgagacagacctttgagaaccaggtcaac
cgcattctgaacgatgcccgtgacaagacaggatcctctgcccagaaatcactgtcagag
tataacaatttcaaatccatggtggtggctggttccaaaggttcaaaaattaacatttca
caggttattgctgtggtggggcagcaaaacgttgagggtaagcgaatcccttttggtttc
aagcaccgcactctccctcactttattaaagatgactatggtccagagagtagaggcttt
gtggaaaactcttatctggccggtctgacaccaacggagttcttctttcatgccatggga
ggtagagagggtctgattgatacagctgtcaaaactgctgagacaggttacattcagcgt
cgtctgatcaagtctatggagtcagttatggtgaagtatgatgctacagtcagaaattcc
attaaccaggttgtccagctgaggtacggagaggatgggctggcagcagaagctgttgag
tttcagaacatggccacccttaagccctccaacaaagcctttgagaagaaattcaagttt
gactacaccaacgaacgagctctccgtcgcactctacaggaggatgtggtgaaagatgtg
atgactaatgctcatgtccagagcgcactggagcgagagtttgagaagatgagggatgac
cgagagatcctgagagccattttccccacaggagacagcaaggttgtactgccgtgcaat
ctcgccagaatgatttggaatgctcagaagattttccgcatcaatcctcggacgccaact
gacctcaatccagcacgagtagtggaaggagttcaggagttgagtaagaagctggtaatt
gtaaatggagatgatcagttaagcaggcaggcccaggaaaacgccacactgctcttcaat
atccacctgcgttcaaccctctcctccaagcgaatgactgaggagttccgtcttagcaca
gaggcttttgattggctgctgggagagatcgaaaccaaatttaaccagtccattgctcac
cctggtgagatggtaggtgctctggctgcccagtctctgggagagcctgccactcagatg
accctgaacactttccactatgccggtgtgtctgccaaaaacgtcactcttggtgtgcct
cgtctcaaagagcttatcaacatctccaagcgacccaagactccctctctgacagtcttt
ctcctcggccaggcggcccgggatgctgagagggccaaagatatcctctgtcggctggag
cacacaaccctgcgcaaggtcactgccaacacggccatttattacgaccccaacccgcag
aacaccgtggtgactgaggatcaggagtgggtgaacgtgtactacgagatgcccgacttt
gatgtgacccgcatttcaccctggctgctgcgtattgaacttgaccgcaaacacatgact
gaccgtaaactgaccatggaacagattgcagaaaagatcaatgctggatttggtgatgac
ctaaactgcatcttcaatgatgacaatgctgagaaactggtgctgcgaattcgtatcatg
aatagcgacgagaataagttccaagaggatgaggaggtagtggataagatggatgatgat
gtcttcctgcgctgcattgaatccaacatgctaacagacatgaccctgcaaggcatcgag
caaatcagcaaggtctacatgcatcttccacagacagacaacaagaagaaaatcatcatt
acagaagatggagagtttaaagcccttcaggagtggattctggaaacagatggagtcagc
ctcatgagggtcctcagtgaaaaggatgtggaccctgtcaggaccacctccaatgacatt
gtggagattttcactgttcttggtattgaggctgtgcgaaaggctctggagagagagttg
taccatgtcatctcttttgatggttcttatgtcaactaccgccatcttgccttgctgtgc
gacacaatgacctgtaggggtcacttgatggccattactcgtcacggcatcaacagacag
gacactggaccactcatgaagtgctcctttgaagaaacggtggacgtgttgatggaagcc
tcatctcatggtgaaagtgacccaatgaaaggcgtttctgagaacatcatgctgggacag
ctagctcctgcagggactggctgctttgacctgttgttggatgcggagaagtgcaagtat
ggcatggagattcctaccaacatccctggcattagtgttgcaggacccacgggtatgttc
tttggctccgcccccagccccatgagtggtatgtctcctgcaatgactccctggaacaca
ggagctactcctgcatatggtgcttggtctcctagtgttggaagtggaatgacacctggt
gctgcaggcttctctcccagcgctgcatctgatgctagtggcttttcgcccggctactct
cctgcctggtcccctactcctggttcacctggctcacctgggccagccagcccttatatc
ccctcaccaggagccttgtctcccaactactctccaacctctcctgcctatgagcctcgt
tctcctggtggctacacccctcagagccctggctactctccaacctcaccatcatactct
ccaacttcgccgtcttactcgcccaccagcccaaactacagccctacatctccgtcctac
tcgcctacatcaccctcctactctcccacatctccatcctattctccaacatccccaagc
tactccccaacctcaccctcttactcaccgacctcaccgtcctattcaccaacctcaccg
tcctattcaccaacgtcacccagctatagcccaacgtcacccagctacagcccaacctca
ccaagctatagcccaacatccccgtcttattctcccacttctccgtcttattcccccacc
tccccgtcctactctccaacctcccccagctactctccaacctccccaagctactcccca
acatctccaagctacagccccacttcacccaactacacacccacctcgcccagttactcc
ccaacctctccttcttacagccctacctcgccgtcctattcgcccacctctccaaattat
accccaaccagccccaattattcccccacgtctccttcatactcccccacctcaccatcc
tactcgccatccagtccacgctacaccccacagtctcccacctacaccccaagttcaccc
tcctacagcccaagttctccatcatactctcctacctctccaaaatacactcccacctct
ccctcatacagtcctagttctccagaatataccccgacgtcacctaaatattcacccact
tccccaaagtactcccccacctcacccaaatacagccccacctctccaacctactcccca
actacacccaagtacagccctacttcccctacttactctccaacttctccaacctacacc
ccaaccagccccaaatattcacccacctccccaacctactctccaacttctccaaaatac
tcaccaacatctcctacctactctccaactagccccaagggctcaacctacagtcccact
tctcctggctacagccccacttctccgacctacagcccagccatcagccctgatgacagt
gatgaagaaaataactaa
DBGET
integrated database retrieval system
