Massilia sp. YMA4: DPH57_08685
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Entry
DPH57_08685 CDS
T05528
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
masy
Massilia sp. YMA4
Pathway
masy03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
masy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
DPH57_08685 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
masy03400
]
DPH57_08685 (ligD)
Enzymes [BR:
masy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
DPH57_08685 (ligD)
DNA repair and recombination proteins [BR:
masy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
DPH57_08685 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AXA91225
UniProt:
A0A7U5XXL1
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All DBs
Position
complement(2052532..2055189)
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AA seq
885 aa
AA seq
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MKDSLKTYKAKRNFAITPEPAEGGEEGKDVLTFVIQKHWATRLHYDFRLELDGTMKSWAV
PKGPSYDTHDKRMAVHVEDHPISYNDFEGTIPEKQYGAGKVIIWDKGTWHPLGDPRQGYR
DGNLKFELRGHKLRGKWVLVRMKRSGEKQEPWLLIKEKDEYVRSADEFSVIDEMPDSVKA
LGMPTDEPLTPQAAAAEETARAHAAPARKRAAVKGEAKAKAKAKAEAAPAAPGVRCALPE
TFAPELATLVDAPPSDPQDWLFEIKFDGYRLLARVDGKDVRLITRNGNDWTHKLEPLRAA
IEKMKLPKGWYDGEIVVHDASGRPNFGLLQQAFDGTRTSNIVYFVFDAPYLDGYDLREVP
LAQRRELLKTVMERAGNDMVRYSAELEAPPAEMVAAACQMGLEGIIGKRRDSTYVSRRSP
DWIKLKCAQRQEFVIGGYTDPKGSRVGIGSLLLGYYGEDGKLHYAGNVGAGFNETTLREI
TAKLKKLASDSNPFAPSKAIEKRAHWVKPTLVAEVTFGEWTGSGSIRHSVFQGLRADKKA
SSVTREKAAHMETLVEGTMQTQSAAKTTKPKAAAKSAPARAPAGLDADSKLPSSLKVTNP
DRLIDPASGTTKIGLVRYYALVADLMLEHLKGRPVALVRAPSGVGGELFFQKHSEVGKLP
GVKQFPQVLDPDHPSMLEVATMQGLLSAAQWNVVEFHTQNAFGKNYEKPNRMIFDLDPGQ
GVSWAQIQEAAQLMRAFLAELGLPAFLKTSGGKGVHVVVPVKPQHDWDTVKGFTKAIVEH
MATTLPDRFAFKSGPKNRVGKIFIDYLRNGRGATTVSAWSARTRAGLGISVPVAWDELAH
LRGGDHWTVATVHDRLDEGNTPWDDYAKSAVSITKAMKQLGYTGA
NT seq
2658 nt
NT seq
+upstream
nt +downstream
nt
atgaaagactccctcaagacctacaaggccaagcgcaacttcgccatcacgccggaaccg
gccgagggcggcgaggagggcaaggacgtgctgacgttcgtcatccagaagcactgggcg
acgcggctgcactacgacttccgcctggagctggacggcaccatgaagagctgggccgtg
ccgaaagggccgagctacgacacgcacgacaagcgcatggccgtgcacgtcgaggaccat
ccgatctcgtacaacgacttcgaaggcacgatcccggagaagcagtacggcgctggcaag
gtcatcatctgggacaagggcacctggcatccgctgggcgacccacgccagggctaccgc
gacggcaacctgaagttcgagctgcgcggccacaagctgcgcggcaagtgggtgctggta
cggatgaagcgctcgggcgagaaacaggagccctggctgctgatcaaggaaaaggacgag
tacgtgcgttccgccgacgagttttccgtcatcgacgaaatgcccgacagcgtcaaggcg
ctgggcatgccgaccgacgagccgttgacgccgcaggccgcggcggccgaggaaacggcg
cgcgcgcatgcggcgccggcgcgcaagagggccgccgtcaagggcgaggccaaggccaag
gccaaggccaaagccgaggccgcgccggcggcgccaggcgtgcgctgcgccttgccggag
acgttcgcgccggagctggccaccctggtggacgcgccgccttcggacccgcaggactgg
ctgttcgagatcaagttcgacggctaccgcctgctggcgcgggtggacggcaaggacgtg
cggctgatcacccgcaacggcaacgactggacccacaagctcgaaccgctgcgcgccgcc
atcgagaagatgaagctgcccaagggctggtacgacggcgagatcgtcgtgcacgacgcc
agcggccggcccaacttcggcctgctgcagcaggcgttcgacggcaccaggaccagcaac
atcgtttacttcgtgttcgatgcgccctatctggatggctacgacctgcgcgaggtgcca
ctggcgcagcggcgcgaattgctcaagaccgtgatggagcgcgccggcaacgacatggtg
cgctactcggccgagctggaggccccgccggccgagatggtggcggcggcctgccagatg
ggcctcgagggcatcatcggcaagcggcgcgactcgacctatgtatcgcgccgctcgccc
gactggatcaagctgaaatgcgcccagcggcaggaattcgtcatcggcggctacaccgac
ccaaaaggctcgcgcgtgggcatcggctcgctgctgctgggttactacggcgaggacggc
aagctgcactacgccggcaacgtgggcgccggcttcaacgagacgaccctgcgcgagatc
acggccaagctgaagaaacttgccagcgacagcaatccgttcgcgccgtcgaaagcgatc
gagaagcgggcgcactgggtcaagcccacgctagtggccgaggtgacgttcggcgaatgg
acgggcagcggctcgatccggcattccgtcttccagggactgcgcgccgacaagaaggca
agcagcgtcacccgcgagaaggcggcccatatggaaacgctggtggagggaaccatgcag
acacaaagtgcggcaaagacgacgaagcccaaggcagcggcaaagagcgcgccagcgcgc
gcgcctgcggggttggacgcggacagcaagctgccctcgtcactgaaggtgacgaacccg
gaccgcctgatcgacccggccagcggcaccaccaagatcggcctggtgcgctactacgcg
ctggtggcggacctgatgctggagcacctgaagggccggccggtcgcgctggtgcgggca
ccgagcggtgtcggcggcgagctgttcttccagaagcattcggaggtgggcaagctgccc
ggtgtgaagcagttcccgcaggtgctcgacccggaccacccgtcgatgctggaagtggcg
acgatgcagggcctgctgtcggcggcgcagtggaacgtggtcgagttccacacccagaat
gcgttcggcaagaactacgagaagccgaaccgcatgatcttcgaccttgacccggggcag
ggcgtgtcgtgggcgcagatccaggaggcggcgcagctgatgcgcgccttcctggccgag
ctgggcctgcccgcgttcctgaagaccagcggcggcaagggcgtgcacgtggtggtgccg
gtcaagccgcagcacgactgggataccgtcaagggcttcaccaaggcgatcgtcgagcac
atggcgacgaccttgccggaccgcttcgcgttcaagagcgggccgaagaaccgggtcggc
aagatcttcatcgactacctgcgcaatggccgcggcgccaccacggtcagcgcgtggtcg
gcccgcacccgtgccggcctgggcatctcggtgccggtggcttgggacgagctggcacac
ctgcgcggcggcgaccactggacggtggccacggtgcacgaccggctcgacgagggcaat
acgccgtgggacgactatgcgaaaagcgccgtcagcattaccaaggcgatgaagcagctg
ggctacaccggcgcgtga
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