Pseudoduganella armeniaca: C9I28_05500
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Entry
C9I28_05500 CDS
T05378
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
KO
K02667
two-component system, NtrC family, response regulator PilR
Organism
masz
Pseudoduganella armeniaca
Pathway
masz02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
masz00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
C9I28_05500
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02022 Two-component system [BR:
masz02022
]
C9I28_05500
02035 Bacterial motility proteins [BR:
masz02035
]
C9I28_05500
Two-component system [BR:
masz02022
]
NtrC family
PilS-PilR (type 4 fimbriae synthesis)
C9I28_05500
Bacterial motility proteins [BR:
masz02035
]
Pilus system
Twitching motility proteins
C9I28_05500
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
Response_reg
HTH_8
HTH_28
AAA_5
AAA_16
AAA_22
HTH_23
HTH_50
Motif
Other DBs
NCBI-ProteinID:
AVR95238
UniProt:
A0A2R4C6S1
LinkDB
All DBs
Position
1251949..1253379
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AA seq
476 aa
AA seq
DB search
MSSPRVLVVDDEEDLRELLEITLLKMGLDVDSAPDLGRARAHLAGGADYGLVLTDMRLPD
GLGLELVREVAASGRNTPIAVVTAFGSTDNAVVALKAGAFDYVTKPVQLDQLRQLVQSAL
KLNGPAPLARGEAVDSRLKGHSAAMQALRAQIARLARSMAPIAITGESGSGKELAAREIH
AQSSRADKPFVAVNCGAIPEALMEAEFFGYRKGAFTGAADERDGFFQAAHGGTLMLDEVA
DLPLAMQVKLLRAIQERRVRKIGATAEEPVDVRIVSATHQDLARCVEQGKFRQDLFYRLN
VIELALPPLRERLDDLPVLTEAILARLAAGGAPAVLGPGVLEALRGYSFPGNVRELENVL
ERALAFANDGVIHVEDLALKGARLLEAGQPEPVSASPTAPVAPLPVPLDEAPAGMPPLPD
LTVLPSNLPEYLERVEREIIVRALAQTQYNRTQAAQLLGISFRQLRYQMQKLNIKE
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atgagttcaccccgggtattggtcgtcgacgacgaagaggacctgcgcgaactgctggaa
atcacgctgctgaagatgggactggacgtcgacagcgcgccggacctcggccgcgcccgc
gcccacctggccggcggcgccgactacggcctggtgctgacggacatgcgcctgcccgac
ggcctggggctggaactggtgcgcgaggtcgccgccagcgggcgcaatacgccgatcgcc
gtcgtcaccgccttcggcagcacggacaatgccgtcgtcgcgctcaaggccggcgccttc
gactacgtgacgaagccggtgcagctggatcaattgcgccagctggtgcagtcggcgctg
aaactgaacgggccggcgccgctggcgcgcggcgaggcggtggacagccgcctgaaggga
cattcggccgccatgcaggcgctgcgggcgcagatcgcgcggctggcgcgctcgatggcg
ccgatcgccatcacgggcgaatcgggcagcggcaaggagctggcggcgcgcgagattcac
gcccagagctcacgcgcggacaagccgttcgtggcggtcaattgcggcgcgattcccgag
gcgctgatggaggccgagttcttcggctaccgcaagggcgcgttcacgggcgcggcggac
gagcgcgatggcttcttccaggccgcccacggcggcaccctgatgctggacgaggtggcg
gatttaccgctggccatgcaggtcaagctgctgcgcgcgatccaggagcggcgcgtgcgc
aagatcggcgccaccgccgaggagccggtggacgtgcgcatcgtcagcgccacccaccag
gacctggcgcgctgcgtcgagcagggcaagttccggcaggacctgttttaccgcctgaac
gtcatcgagctggcgctgccgccgctgcgcgagcggctcgacgatctgccggtgctgacc
gaggcgatcctggcgcgcctggcggcgggcggcgcgccggccgtgctgggcccgggcgtg
ctggaggcactgcgcggctacagcttccccggtaacgtgcgcgagctggaaaacgtgctg
gaacgggcgctggcgttcgccaacgacggcgtgatccacgtcgaggacctggcgttgaag
ggcgcacggctgctcgaagcgggtcagcctgaaccggtgtcggcgtcgccaaccgccccg
gtcgcgccgctgccggtgccgctggacgaggcgccggccggcatgccgccgctgccggat
ctgacggtgttgccgtccaacctgccggaatacctggagcgggtcgagcgcgagatcatc
gtgcgtgcgctggcgcagacccagtacaaccgcacccaggccgcccagctgctgggcatc
agtttccggcagctgcgctatcagatgcaaaaactgaacatcaaggaatga
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