Pseudoduganella armeniaca: C9I28_14530
Help
Entry
C9I28_14530 CDS
T05378
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
masz
Pseudoduganella armeniaca
Pathway
masz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
masz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C9I28_14530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
masz03019
]
C9I28_14530
Enzymes [BR:
masz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C9I28_14530
Messenger RNA biogenesis [BR:
masz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C9I28_14530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
AVR96754
UniProt:
A0A2R4CAT5
LinkDB
All DBs
Position
complement(3339480..3340952)
Genome browser
AA seq
490 aa
AA seq
DB search
MSFAALQLIDPLLRTLAELGYDDPTPVQKQAIPAVLAGRDLMAAAQTGTGKTAGFALPLL
QRLTLAGAVGPHGVRCLVLVPTRELAEQVYDSFRRYGAALPLRAFVAYGGVPIEPQVNKL
RKGLDVLVATPGRLLDLLRQGALTFAQLETLVLDEADRMLDLGFAADLDAVFAALPAQRQ
TLLFSATFSDTIHAMATQLLQDPVSVQASPANAAAKTVRQLVYTTDKKAKPELLVHLARQ
QDWGQALIFAKTKKGVDQLVALLQDEGFSAEAIHGDRPQPARLQALNRFKARQVQLLVAT
DVAARGLDIQALPLVVNMDLPTVAEDYVHRIGRTGRAGAAGAAISLVAADEVELLRAIET
LIKQVLPRVEEPGFEANHRVPSTGTPPKAATVVRPAKAARPAVPRLAVPKQAVPKQAVPK
LAVPKPAAPRPSAPRPAGGFEQAPLAPPKPARKPRPAAVPPGRTVVATSRGAKAAAKAPA
KAAAKGRPKR
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atgagcttcgccgccctgcaactgatcgacccgctgctgcgcaccctggcggagctgggc
tacgacgacccgacgcccgtgcagaagcaggcgattcccgccgtgctggccggccgcgac
ctgatggcggcggcgcagaccggcaccggcaagacggccggcttcgcgctgccgctgctg
cagcgcctgacgctggccggcgccgtcggcccgcacggcgtacgctgcctggtgctggtg
cccacccgcgaactggccgagcaggtctacgacagcttccgccgctacggcgccgcgctg
ccgctgcgcgctttcgtcgcctatggcggcgtgccgatcgagccgcaggtaaacaagctg
cgcaagggcctggacgtactggtggccacgcccggccgcctgctcgacctgctgcgccag
ggcgcgctgacgttcgcccagctggaaaccctggtgctggacgaggccgaccgcatgctc
gacctgggcttcgccgccgacctggacgcggtgttcgccgccctgcccgcgcagcgccag
accttgctgttctcggccacgttctcggacacgatccacgccatggccacgcaactgctg
caagacccggtgtcggtccaggccagccccgccaacgcggcggcgaagaccgtgcgccag
ctggtctacacgaccgacaagaaggccaagccggaactgctggtgcacctggcgcgccag
caggactggggccaggcgctgatcttcgccaagacgaaaaaaggtgtcgaccagctggtc
gccctgctgcaggacgaaggtttcagcgccgaggcgatccacggcgaccgtccgcaaccg
gcccgcctgcaagccctgaaccgcttcaaggcacgccaggtgcagctgctggtggccacc
gacgtggcggcgcgcggcctggacatccaggccctgccgctggtcgtcaacatggacctg
ccgacggtggccgaggattacgtgcaccgcatcgggcgcacgggccgggccggtgccgcc
ggcgcggccatctcgctggtggcggcggacgaagtggagctgctgcgggcgatcgagacg
ctgatcaagcaagtgctgccgcgcgtggaggagccgggcttcgaggccaatcaccgggtg
ccgtccaccggcacgccgcccaaggcggccaccgtggtccgtcccgccaaggccgctcgg
ccggccgtgccgagactggccgtgccgaaacaggccgtgccgaaacaggccgtgccgaaa
ctggccgtgccgaagccggctgcgccgcggccgagcgcgccccgccccgccggcggcttc
gaacaggcgccgctggcgccgccaaagccagcgcgcaagccgcgcccggccgcggtgccg
ccggggcgcacggtggtcgccacgtcccgtggcgccaaggcggcagccaaggcgccagcg
aaggccgctgccaagggccggcctaaacgttag
DBGET
integrated database retrieval system
