Pseudoduganella armeniaca: C9I28_24605
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Entry
C9I28_24605 CDS
T05378
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
masz
Pseudoduganella armeniaca
Pathway
masz02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
masz00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
C9I28_24605
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
masz03021
]
C9I28_24605
Transcription machinery [BR:
masz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
C9I28_24605
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
GerE
Motif
Other DBs
NCBI-ProteinID:
AVR98464
UniProt:
A0A2R4CFN8
LinkDB
All DBs
Position
complement(5660723..5662960)
Genome browser
AA seq
745 aa
AA seq
DB search
MPAKKPETQAAAKPSKVTAQAAKTADKSEASTPPVVSQTTDAAALAAIDTSGYVLPSVKV
PGRRGRKPKEFQPENDEVAALNAVERAELKAVDKAKAKDRKAKEKALLKDAFSSDTEATE
EELERRRQKLKTLIKFGKERGFLTYAEINDHLPDNIVDPEAIEGIIGTFNDMGIAVYEHA
PDAETLLLSDNVATVTSDDEAEAAAEAALSTVDSDFGRTTDPVRMYMREMGSVELLTREG
EIEIAKRIEDGLKDMIQAISACPVTIAEIIATSDRIRNDETKIDEIVDGLVDENEDQPAA
AAAPPATEDDEDDEEEEEEEEEEEEEASPSGAAAGYSAEQLEAMKNAALEKFDEIANQFD
KMRKAFEKEGYNSKAYVRAQEAISNELLGIRFTAKVVEKLCDTLRGQVDEVRHIEKQILD
VAVNKCGMPRAHFIKVFPGNETNLEWVDGEVAANHAYSAILGRNIPTIKELQQRLIDLQA
RVVLPLPDLRNINRQMAAGEMKARKAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGN
IGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQ
ILQETGAEPDPATLAIKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDNNTL
APSDAALHASMRGVVKDVLDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQ
IEAKALRKLRHPSRSDKLKSFLEGN
NT seq
2238 nt
NT seq
+upstream
nt +downstream
nt
gtgccagcaaagaaacctgaaacccaagcggctgcaaagcccagcaaagtgaccgcccaa
gcagcgaagacggccgacaagtctgaagccagcacgccacccgtggtgagccagacaacg
gacgccgctgccctggcggccatcgacacgtccggttacgtgctcccgtccgtcaaggta
ccgggccggcgcggtcgcaagcccaaggaattccagccagagaacgacgaggtcgccgcg
ctcaacgcggtcgagcgcgccgagctgaaggccgtcgacaaggccaaggcgaaggaccgc
aaggccaaggaaaaggcgctgctgaaggacgcgttctcgtcggacacggaagcgacggaa
gaggaactggagcgccgccgccagaaactgaaaacgctgatcaagttcggcaaggaacgt
ggcttcctcacgtatgccgagatcaacgaccacctgcccgacaatatcgtcgatccggaa
gcgatcgaaggcatcatcggcacgttcaacgatatgggcatcgccgtctacgagcacgcc
ccggacgcggaaaccctgctgctgtcggacaatgtcgccacggtgaccagcgacgacgaa
gcggaagcggcggccgaggccgcgctctccaccgtcgactccgatttcggccgcaccacg
gaccccgtgcgcatgtacatgcgcgagatgggctcggtcgagctgctgacgcgcgaaggc
gagatcgagatcgccaagcgcatcgaagacggcctgaaggacatgatccaggccatctcg
gcctgccccgtgacgatcgccgagatcatcgccacctccgaccgcatccgtaacgacgag
accaagatcgacgagatcgtcgacggcctggtcgacgagaacgaggaccagcccgccgcc
gccgcggcgccgccggccacggaagacgacgaagacgacgaggaagaggaagaagaggaa
gaagaggaagaggaagaagccagcccgtccggtgcggcggccggctactcggccgagcag
ctcgaggcgatgaagaatgccgcgctggagaaattcgacgagatcgccaaccagttcgac
aagatgcgcaaggcattcgagaaggaaggctacaactcgaaagcctatgtgcgcgcgcag
gaagcgatctcgaacgaactgctgggcatccgcttcacggcaaaagtcgtcgaaaagctg
tgcgacacgctgcgcggccaggtggacgaagtgcgccatatcgagaaacagatcctggac
gtggcggtcaacaagtgcggcatgccgcgcgcccacttcatcaaggtcttcccgggcaac
gaaacgaacctggaatgggtggacggcgaagtggccgccaaccacgcctacagcgcgatt
ctgggccgcaacatcccgacgatcaaggagttgcagcagcgcctgatcgacctgcaggcg
cgtgtcgtgctgccgctgccggacctgcgcaacatcaaccgccagatggcggcgggcgaa
atgaaggcgcgcaaggccaagcgcgagatgacggaagcgaacttgcgtctggtgatctcg
atcgcgaagaagtacaccaaccgcggccttcagttcctcgacctgatccaggaaggcaat
atcggcctgatgaaggccgtggacaagttcgagtaccgccgcggctacaagttctccacg
tacgccacgtggtggatccgccaggccatcacgcgctcgatcgccgaccaggcccgcacg
atccgtatcccggtccacatgatcgagacgatcaacaagatgaaccggatcagccgccag
atcctgcaggaaacgggcgccgagcctgatccggccaccctggcgatcaaaatggagatg
cccgaggacaagatccgcaagatcatgaagatcgccaaggagccgatctcgatggaaacg
ccgatcggcgacgacgacgattcccacctgggcgacttcatcgaggacaacaacacgctg
gcaccgtcggacgcggcgctgcacgcctcgatgcgcggcgtggtcaaggacgtgctcgat
tcgctgacaccgcgtgaagccaaggtgctgcgcatgcgcttcggcatcgagatgtccacg
gatcacaccctggaagaggtgggcaagcagttcgacgtcacgcgcgagcggattcgccag
atcgaggcgaaggcgctgcgcaagctgcgccacccgtcccgctcggacaagctgaagagc
ttcctggaagggaactga
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