Micromonospora aurantiaca: Micau_5172
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Entry
Micau_5172 CDS
T01296
Name
(GenBank) DNA polymerase LigD, polymerase domain protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mau
Micromonospora aurantiaca
Pathway
mau03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mau00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Micau_5172
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mau03400
]
Micau_5172
Enzymes [BR:
mau01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Micau_5172
DNA repair and recombination proteins [BR:
mau03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Micau_5172
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ADL48679
UniProt:
D9TCP2
LinkDB
All DBs
Position
complement(5818184..5819143)
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AA seq
319 aa
AA seq
DB search
MGAADETRAGVSLTNLDQPLFDGAGATKRDLVDYLDAMADRILPELRDRPLSVLRVRPGQ
EPFMQKNLPKYTPGWVRRTEVWAEASHRRISYALCDDRRTLLWFANQRAVEYHPTLARAG
VPEHPSHLVLDLDPPEGDAFGAVVRVALLVRQALADAGLAGAVKTSGAKGLHVVVPVDPA
TTAEEAAAATRALAVRTERLDPAVATTAFIVADRGGRVFVDSTRAYGATVVAAYSPRIRP
GAPVSYPVGWTDLESATPADFTVRTVPGLLGDRDPWAEALPAPQRLPADLVEQGRTIPVA
RVQAMHEGKRRAKARREAG
NT seq
960 nt
NT seq
+upstream
nt +downstream
nt
atgggtgccgccgacgagacccgggccggagtgtcgctgaccaacctcgaccagccgctg
ttcgacggcgccggggcgaccaaacgcgacctggtcgactacctcgacgcgatggccgac
cggatcctgccggaactgcgggaccggccgctgtcggtgctgcgggtgcggcccggccag
gagccgttcatgcagaagaacctgccgaagtacacgcccggctgggtgcgccgcaccgag
gtgtgggcggaggcgtcgcaccggcgcatctcgtacgcgctctgcgacgaccggcggacg
ctgctctggttcgccaaccagcgggcggtggagtaccacccgacgctggcccgcgccggt
gtgcccgagcacccgtcccacctggtgctcgacctggacccgccggagggggacgcgttc
ggcgccgtggtgcgggtcgccctgctggtccggcaggcgctcgccgacgccgggctcgca
ggcgcggtgaagacgagcggcgccaaggggctgcacgtggtcgtgccggtggacccggcc
accacggcggaggaggccgccgccgcgacccgcgctctcgccgtccgtaccgaacggctc
gacccggcggtcgcgaccaccgcgttcatcgtcgccgaccgcggcggccgcgtcttcgtc
gactccacccgggcgtacggcgcgactgtggtggccgcctacagccctcggatccggccc
ggcgccccggtgtcgtacccggtgggctggaccgatctggagagcgcgaccccggccgac
ttcaccgtgcggaccgtgccgggcctgctgggggaccgggatccctgggctgaggcgctg
cccgcgccgcagcgcctgccggcggacctggtcgagcaggggcggaccatcccggttgcc
cgggtgcaggcgatgcacgagggcaagcgccgcgccaaggcccgccgcgaggccgggtga
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