Microbacterium aurum: BOH66_07730
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Entry
BOH66_07730 CDS
T04977
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
maur
Microbacterium aurum
Pathway
maur03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
maur00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BOH66_07730
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
maur03400
]
BOH66_07730
Enzymes [BR:
maur01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BOH66_07730
DNA repair and recombination proteins [BR:
maur03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BOH66_07730
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
APZ34149
UniProt:
A0A1P8U7P4
LinkDB
All DBs
Position
complement(1557878..1560331)
Genome browser
AA seq
817 aa
AA seq
DB search
MAGAGQVVEVGGRRLRLTNLDKVLYPEAGTTKAEVIDYYSRIAPWMLPHLAGRPVTRLRW
PEGTGHAPFFAKDLEAGAPDWLRRRAIDHSSGAKDYPLVDDVAGLVYLAQVASLELHTPQ
WRFDAAGSSAGSSRRAPDRLVLDLDPGPGAGLAECAEVARWAREILQGVGMDPLPVTSGS
KGIHLYAALDGTRLSDEISAFARELARALEADHADLVVSAMTKAVRDGKVFVDWSQNNGA
KTTIAPYSLRGRAQPMVAAPRTWDELDDPVLRHLRFDEVLERVATTGDLLAPLAPAAADP
LTAYVGKRAADATPEPFPTSAARVAATGASGAALRFVIQEHHARRLHFDLRLERDGVLES
WAVPRGIPETTDRNHLAVMTEPHPMEYLTFAGEIPAGQYGAGSMTVWDTGTYEAEKWRED
EIIFTLTGRPGGPLGVVRLALIRTSGAGEKSQWLLHLMAPRPAAAPSPAGSSAAPESPAA
PASSPATVRPRGATAADDAPMLAVNATPARARAAAARRSEAWVEFKWDGIRAIGTWDGRR
LRLRARSGTDITARYPELTAVDAGLGAAPAVIDGEIVAMDAAGRPSFSRLQSRMHLTTPR
EIERESRRVPATYILFDVLRAADADVAARPLRERRGILEEIAADAVPAIVLPPVAADVDA
ALQTARELDLEGIVVKDPDAPYRRGARSEEWLKVKLTRTQDVVIGGIRPGKGGRTGAIGS
LLLGIPEAGELRYVGRVGSGFSERELTRLADVLTPLRTDENPFTGVPAADASDALWVRPQ
RVAEVEFAEFTPGGTLRHARWRGLRPDVAPDAVRREV
NT seq
2454 nt
NT seq
+upstream
nt +downstream
nt
atggcaggcgcggggcaggtcgtcgaggtggggggccgtcgcctgcggctgaccaatctg
gacaaggtgctctaccccgaggcgggcacgacgaaggccgaggtcatcgactactactcg
cggatcgcgccgtggatgctgccacacctcgccggccgtccggtcacgcgcctgcgctgg
cccgaggggaccggacacgccccgttcttcgcgaaggatctcgaagccggcgcccccgac
tggctgcgacgccgggcgatcgaccactcctcaggggcgaaggactacccgctcgtcgac
gacgtcgccggactcgtgtacctcgcccaggtcgcgagcctcgagctgcacacgccgcag
tggcgtttcgacgccgcggggagctccgccggttcgtcacggcgcgcgccggaccgcctc
gtcctcgacctcgatcccggacccggtgcgggcctcgccgaatgcgccgaggtcgcgcgg
tgggcacgtgagatcctgcagggtgtcggcatggatccgctgcccgtgacgagcgggtcc
aaggggatccacctgtacgcggcgctggacggcacgcgcttgagcgacgagatctcggca
ttcgcccgcgagctcgcccgggcgctggaggccgaccacgccgatctcgtcgtgagcgcg
atgacgaaggccgtccgcgacggcaaggtcttcgtcgactggagccagaacaacggcgcg
aagaccaccatcgcgccgtactcgctgcgaggacgcgcccagccgatggtcgcagcgccc
cgcacgtgggacgagctcgacgatccggtcctgcgacacctgcgcttcgacgaggtgctc
gagcgcgtggcgaccacgggcgatctgctcgccccgcttgctcccgcggccgccgatccg
ctcacggcctacgtcggcaagcgcgcggccgacgcgacgccggagccgttcccgacctcc
gccgctcgcgtcgccgctacgggcgcgtccggcgccgcgctccggttcgtcatccaggag
caccacgcacggcggctgcacttcgatctccggctcgaacgggacggcgtgctggagagc
tgggcggtcccccgcggcatccccgagacgaccgatcgcaaccatctcgcggtcatgacc
gagccgcacccgatggagtacctgaccttcgccggcgagatccccgccggacagtacggc
gcgggcagcatgacggtgtgggacaccggcacgtacgaggccgagaagtggcgcgaggac
gagatcatcttcacgctgaccggccgccccggcgggccgctcggtgtcgtgcgcctggcc
ctcatccgcacctccggcgccggcgagaagtcgcagtggctgctgcacctgatggcccct
cgccccgcggcggcgccctcgccggcgggatcatcggcggcgccggaatcgccggcagcg
ccagcgtcttcgccggcgacggtgcgcccgcggggcgcgacggcggcggacgacgcgccg
atgctcgcggtgaacgccacgccggcacgggcacgcgccgccgcggcgcgtcgcagtgag
gcgtgggtggagttcaaatgggacggcatccgggcgatcggcacgtgggacggtcggcgg
ctgcgcctgcgcgcgcgcagcggcaccgacatcaccgcgcgctaccccgagctgaccgcc
gtggacgcggggctcggcgccgccccggccgtgatcgacggtgagatcgtggcgatggat
gccgcggggcggccgagcttctcccggctccagtcgcgcatgcacctgacgacgccccgc
gagatcgaacgagagtcccgccgggtgccggcgacctacatcctgttcgacgtgctgcgc
gccgcggacgccgacgtcgccgcccggccgttgcgcgagcgccgcggcatcctcgaggag
atcgccgccgacgccgttcccgcgatcgtgctgccgccggtcgcggccgacgtggatgcc
gccctgcagaccgcgcgggagctcgacctcgagggcatcgtcgtgaaagaccccgacgcc
ccctaccgccgcggcgcccgcagcgaggaatggctgaaggtcaagctgacgcgcacccag
gacgtcgtgatcggcggcatccgccccggcaaaggtggtcgcaccggcgccatcggctcc
ctgctgcttggcatcccggaggccggcgagctgcgctatgtggggcgtgtggggtcgggc
ttcagcgaacgggagctgacgcgactggccgacgtgctcacgccgcttcgcaccgacgag
aacccgttcacgggcgttcccgccgcggacgcgtcggacgccctgtgggtgcgtccacaa
cgagtggccgaggtcgagttcgccgagttcaccccgggcggcacactgcgccatgcgcgc
tggcgggggctgcgccccgatgtcgcccccgacgccgtgcgccgcgaggtctga
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