Mycobacterium avium 104: MAV_1056
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Entry
MAV_1056 CDS
T00433
Name
(GenBank) DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mav
Mycobacterium avium 104
Pathway
mav03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MAV_1056
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mav03400
]
MAV_1056
Enzymes [BR:
mav01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MAV_1056
DNA repair and recombination proteins [BR:
mav03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
MAV_1056
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ABK69452
UniProt:
A0A0H3A334
LinkDB
All DBs
Position
992307..994607
Genome browser
AA seq
766 aa
AA seq
DB search
MNAPRAWPAEPTATPRVKLTNADKVLYPATGTTKADVFDYYTRIADVMIPHIAGRPVTRK
RWPNGVDQESFFEKQLASSAPDWLPRASVTHRSGTTTYPIIDSATGLAWIAQQAALEVHV
PQWRFVAEWTRSRAEELKPGPATRLVFDLDPGEGVTMAQLAEVARAVRDLIDGIGLQTFP
LTSGSKGLHLYTPLTEPVSSKGATVLAKRVAQQLEKTMPKLVTSTMTKSLRAGKIFVDWS
QNNGSKTTIAPYSLRGRDHPTVAAPRTWDELDDPALRHLRYDEVLTRVARDGDLLAELDA
SDNQTPVPDRLTKYRSMRDASKTPEPVPAAKPAAGRGNTFVIQEHHARRLHYDFRLERDG
VLVSWAVPKNLPDTPAVNHLAVHTEDHPLEYGGFEGVIPKGEYGAGRVVIWDSGTYDAEK
FQDDEVIVNLHGRKISGRYALIQTEGDQWLAHRMKDQNVFDFDTIAPMLATHGSVSALKA
SQWAFEGKWDGYRLLVEADHGTLRVRSRRGREVTGEYRELRSLAKALEEHHAVLDGEAVV
LDKRGVPNFHEMQNRGKSARVEFWAFDLLYLDGRSLLRARYRDRRKLLEMLASGGDLTVP
ELLPGDGDQALRQSAERGWEGVIAKRRDSTYQPGRRSSSWIKDKHWNTQEVVIGGWKAGE
GGRSSGIGSLLMGIPGPGGLHFAGRVGTGFTERDLANLKKTLAPLRTDQSPFDAPLPRSE
AKGVTFVEPVLVGEVRYSEWTPDDRLRQSSWRGLRPDKEASEVVRE
NT seq
2301 nt
NT seq
+upstream
nt +downstream
nt
atgaacgcgccgcgcgcttggcccgctgagccgacagcgacgccgcgggtgaaactgacc
aacgccgacaaggtgctctatcccgcgacgggaaccaccaaagccgacgtcttcgactac
tacacgcggatcgccgacgtgatgatcccgcacatcgccgggcgtccggtcacccggaag
cgctggcccaacggcgtcgatcaggaatcgttcttcgagaagcagctggcctcctcggca
ccggactggctgccgcgcgccagcgtgacccaccgatccggcacgacgacctatccgatc
atcgacagcgccaccggcctggcctggatcgcccagcaggcggcgctggaggtgcacgtg
ccgcagtggcggttcgtcgcggagtggacccgaagccgggccgaagaactcaaacccggc
ccggcgactcgactggtgttcgaccttgacccgggcgaaggcgtgacgatggcccagctc
gccgaggtggcgcgcgccgtccgcgacctgatcgatgggatcgggctgcagacgtttccg
ctcaccagcggcagcaagggactgcacctgtacacgccgctgacggagccggtgagcagc
aaaggcgccaccgtgctggccaaacgcgttgcgcagcaactggaaaagactatgccgaag
ctggtcacgtcgaccatgaccaagagcctgcgggcgggaaagatctttgtggactggagc
cagaacaacggctccaagacgaccatcgcgccctattcgctgcgcgggcgcgaccacccc
accgtcgccgcgccgcgcacctgggacgaactcgacgacccggcgctgcgtcacctgcgc
tacgacgaagtgctgacccgggtcgcccgcgacggtgacctgctcgccgagctggacgcc
tccgacaaccagacaccggtgccggaccgcctgaccaaataccgcagcatgcgcgacgcc
tccaaaacgcccgagccggttccggccgcgaaacctgctgcgggacgaggcaataccttc
gtcatccaagagcaccacgcccggcggctgcactacgacttccggctggagcgcgacggg
gtgctggtgtcctgggcggtgccgaagaacctgcccgacacccccgcggtgaatcacctg
gccgtacacaccgaggatcacccgctggaatacggcgggttcgagggcgtcatccccaaa
ggcgaatacggggcgggcagggtggtcatctgggactccggaacctatgacgccgagaag
ttccaggacgacgaggtgatcgtcaacctgcacggccgcaagatctccgggcgctacgcg
ctgatccagaccgagggcgaccaatggctggcgcaccggatgaaggaccagaacgtcttc
gacttcgacacgatcgccccgatgctcgccacccacggttcggtgtcggcgctcaaggcg
agccagtgggcgttcgagggcaaatgggacggctaccggctactggtcgaggccgaccac
ggcaccctgcgggtgcggtcccggcgcggtcgcgaagtcaccggtgagtaccgcgaatta
cgctcgctggcaaaggctctcgaggagcaccacgcggtgctcgacggcgaggccgtggtg
ctggacaagcgcggcgtgcccaacttccacgagatgcaaaaccgcggcaagagcgcgcgg
gtcgaattctgggcgttcgacctgctctacctcgacggccgctcgctgctgcgggcccgc
taccgcgatcggcgaaaactgttggaaatgctggcctccggcggtgatctgaccgttccc
gagctgctgcccggcgacggcgaccaagcgctgcggcagtccgccgagcgcggttgggag
ggcgtgatcgccaagcggcgcgactccacctatcagccgggccggcgctcgtcctcctgg
atcaaggacaagcattggaacacccaggaagtcgtgatcggcggctggaaggccggggaa
ggcggacgcagcagcggcatcggttccctgctgatgggcattccgggcccgggcggcctg
cacttcgccggccgtgtcggcaccgggttcaccgaacgcgacctggccaacttgaagaag
acgctggccccgctgcgcaccgaccaatcgcccttcgatgcgccgcttccccgcagcgag
gccaagggcgtcacgttcgtcgagccggtgctggtgggcgaggtgcgctacagcgagtgg
acaccggatgaccggctgcgccaatcgagttggcgcgggctgcggccggacaaggaggca
agcgaggtggtacgcgagtga
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