Mycobacterium avium subsp. paratuberculosis E1: RC58_14795
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Entry
RC58_14795 CDS
T03787
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mavi
Mycobacterium avium subsp. paratuberculosis E1
Pathway
mavi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mavi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
RC58_14795
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mavi03400
]
RC58_14795
Enzymes [BR:
mavi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
RC58_14795
DNA repair and recombination proteins [BR:
mavi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
RC58_14795
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AJK76130
UniProt:
A0A7L5MLU1
LinkDB
All DBs
Position
complement(3268649..3270943)
Genome browser
AA seq
764 aa
AA seq
DB search
MNAPRAWPAEPTATPRVKLTNADKVLYPATGTTKADVFDYYTRIADVMIPHIAGRPVTRK
RWPNGVDQESFFEKQLASSAPDWLPRASVTHRSGTTTYPIIDSATGLAWIAQQAALEVHV
PQWRFVAEWTRSRAEELKPGPATRLVFDLDPGEGVTMAQLAEVARAVRDLIDGIGLQTFP
LTSGSKGLHLYTPLTEPVSSKGATVLAKRVAQQLEKTMPKLVTSTMTKSLRAGKIFVDWS
QNNGSKTTIAPYSLRGRDHPTVAAPRTWDELDDPALRHLRYDEVLTRVARDGDLLAELDD
NQTPVPDRLTKYRSMRDASKTPEPVPDAKPAAGQGNTFVIQEHHARRLHYDFRLERDGVL
VSWAVPKNLPDTPAVNHLAVHTEDHPLEYGGFEGVIPKGEYGAGRVVIWDSGTYDAEKFQ
DDEVIVNLHGRKISGRYALIQTQGDQWLAHRMKDQNVFEFDTIAPMLATHGSVSALKASQ
WAFEGKWDGYRLLVEADHGTLRVRSRRGREVTGEYRELRSLAKALEEHHAVLDGEAVVLD
KRGVPNFHEMQNRGKSARVEFWAFDLLYLDGRSLLRARYRDRRKLLEMLASGGALTVPEL
LPGDGDQALRQSAERGWEGVIAKRRDSTYQPGRRSSSWIKDKHWNTQEVVIGGWKAGEGG
RSSGIGSLLMGIPGPGGLHFAGRVGTGFTERDLANLKKTLAPLRTDQSPFDAPLPRSEAK
GVTFVEPVLVGEVRYSEWTPDDRLRQSSWRGLRPDKEASEVVRE
NT seq
2295 nt
NT seq
+upstream
nt +downstream
nt
atgaacgcgccgcgcgcttggcccgctgagccgacagcgacgccgcgggtgaaactgacc
aacgccgacaaggtgctctatcccgcgacgggaaccaccaaagccgacgtcttcgactac
tacacgcggatcgccgacgtgatgatcccgcacatcgccgggcgtccggtcacccggaag
cgctggcccaacggcgtcgatcaggaatcgttcttcgaaaagcagctggcctcctcggca
ccggactggctgccgcgcgccagcgtgacccaccgatccggcacgacgacctatccgatc
atcgacagcgccaccggcctggcctggatcgcccagcaggcggcgctggaggtgcacgtg
ccgcagtggcggttcgtcgcggagtggacccgaagccgggccgaagaactcaaacccggc
ccggcgactcgactggtgttcgacctcgacccgggcgaaggcgtgacgatggcccagctc
gccgaggtggcgcgcgccgtccgcgacctgatcgatgggatcgggctgcagacgtttccg
ctcaccagcggcagcaagggactgcacctgtacacgccgctgacggagccggtgagcagc
aaaggcgccaccgtgctggccaaacgcgttgcgcagcaactggaaaagaccatgccgaag
ctggtcacctcgaccatgaccaagagcctgcgggcgggaaagatctttgtggactggagc
cagaacaacggctccaagacgaccatcgcgccctattcgctgcgcgggcgcgaccacccc
accgtcgccgcgccgcgcacctgggacgaactcgacgacccggcgctgcgtcacctgcgc
tacgacgaagtgctgacccgggtcgcccgcgacggtgacctgctcgccgagctggacgac
aaccagacaccggtgccggaccgcctgaccaaataccgcagcatgcgcgacgcctccaaa
acacccgagccggttccggacgcgaaacctgctgcgggacaaggtaataccttcgtcatc
caagagcaccacgcccggcggctgcactacgacttccggctggagcgcgacggggtgctg
gtgtcctgggcggtgccgaagaacctgcccgacacccccgcggtgaatcacctggccgtg
cacaccgaggatcacccgctggaatacggcgggttcgagggcgtcatccccaaaggcgaa
tacggggcgggcagggtggtcatctgggactccggaacctatgacgccgagaagttccag
gacgacgaggtgatcgtcaacctgcacggccgcaagatctccgggcgctacgcgctgatc
cagacccagggcgaccaatggctggcgcaccggatgaaggaccagaacgtcttcgagttc
gacacgatcgccccgatgctcgccacccacggttcggtgtcggcgctcaaggcgagccag
tgggcgttcgagggcaaatgggacggctaccggctactggtcgaggccgaccacggcacc
ctgcgggtgcggtcccggcgcggtcgcgaagtcaccggcgagtaccgcgaattacgctcg
ctggcaaaggctctcgaggagcaccacgcggtgctcgacggcgaggccgtggtgctggac
aagcgcggcgtgcccaacttccacgagatgcaaaaccgcggcaagagcgcgcgggtcgaa
ttctgggcgttcgacctgctctacctcgacggccgctcgctgctgcgggcccgctaccgc
gaccggcgaaaactgttggaaatgctggcctccggcggtgctctcaccgttcccgagctg
ctgcccggcgacggcgaccaagcgctgcggcagtccgccgagcgcggttgggagggcgtg
atcgccaagcggcgcgactccacctatcagcccggccggcgctcgtcctcctggatcaag
gacaagcattggaacacccaggaagtcgtgatcggcggctggaaggccggggaaggcgga
cgcagcagcggcatcggttccctgctgatgggcattccgggcccgggcggcctgcacttc
gccggccgcgtcggcaccgggttcaccgaacgcgacctagccaacttgaagaagacgctg
gccccgctgcgcaccgaccaatcgcccttcgatgcgccgcttccccgcagcgaggccaag
ggcgtcacgttcgtcgagccggtgctggtgggcgaggtgcgctacagcgagtggacaccg
gatgaccggctgcgccaatcgagttggcgcgggctgcggccggacaaggaagcaagcgag
gtggtacgcgagtga
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