Mycobacterium avium subsp. paratuberculosis E93: RE97_12540
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Entry
RE97_12540 CDS
T03847
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mavu
Mycobacterium avium subsp. paratuberculosis E93
Pathway
mavu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mavu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
RE97_12540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mavu03400
]
RE97_12540
Enzymes [BR:
mavu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
RE97_12540
DNA repair and recombination proteins [BR:
mavu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
RE97_12540
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_ligase_OB_2
UvrA_inter
Motif
Other DBs
NCBI-ProteinID:
AJK79927
UniProt:
A0A7U6EJU9
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All DBs
Position
2760848..2761846
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AA seq
332 aa
AA seq
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MTDFAALPDSVRAALRDEPVPQWCSPTLATLTEKRFSDPHWIFERKFDGMRCLAFRDGDR
VRLLSRNRKPLNGTYPELVESLAAQRETRFVLDGEVVAFEGRRTSFARLQGRLGITDPDV
ARASSVRIYYYVFDLLHLDGKSTVAVPLIWRKRLLRKAIDFTDPLRYAPHRVGDGMAAYR
AACGRGDEGVIAKRAESAYDGRRSENWLKFKCVRDQEFVVGGYTSPKGKRLELGALLLGY
YQGDQLRYAGKVGTGFDEATLHRLHQLLSGIACDTTPFTRSLVPEAGAHWVRPELVVQIG
FTEWTRDGKLRHPRYLGIRTDKDPTEVIRETR
NT seq
999 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgacttcgccgcgctgcccgattccgtgcgtgccgcgctgcgcgacgagcccgtg
ccccagtggtgctcgcccacgctggccaccctcaccgagaagcgattctccgacccacac
tggatcttcgagcgcaagttcgacggcatgcgctgcctggccttccgcgacggcgaccgg
gtccggctgctgtcgcgaaaccgtaagccgctcaacgggacctacccggaattggtggag
tcgctggccgcgcagcgcgagacgcgcttcgtgctggacggcgaggtggtggcgttcgag
ggccgccgcaccagcttcgcccggctgcagggccggctgggcatcaccgaccccgacgtg
gcccgggcatcgtcggtgcgtatctactactacgtgttcgacctgctgcatctcgacggc
aagtcgaccgtcgcggtgccactgatctggcgtaagagattgctgcgcaaggcaatcgac
ttcaccgatccgctgcggtatgcaccgcaccgggtcggggacgggatggccgcgtaccgg
gcggcgtgcggtcgtggtgacgagggtgtgatcgccaagcgggccgaatcggcctatgac
ggccgccgctcggagaactggttgaagttcaaatgcgtgcgcgaccaggaattcgtggtc
ggcggctacaccagccccaagggcaagcggctcgagttgggcgccctgctgctgggctac
taccagggggaccagttgcgctacgccggcaaggtgggcaccggtttcgacgaggcgacg
ctacaccgcttgcaccagctgctgtccgggatcgcttgcgacacaacgccattcacccgg
agtttggtgcccgaggccggcgcgcactgggtgcgcccggagctggtggtccagatcggg
ttcaccgagtggacccgcgacggaaagctacgtcacccccgctatctcggcatccgcacc
gacaaggatcccaccgaggtgatccgggagacgcgctga
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