Mycobacterium basiliense: MB901379_03651
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Entry
MB901379_03651 CDS
T07125
Symbol
deaD
Name
(GenBank) Cold-shock DEAD box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mbai
Mycobacterium basiliense
Pathway
mbai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mbai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MB901379_03651 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mbai03019
]
MB901379_03651 (deaD)
03009 Ribosome biogenesis [BR:
mbai03009
]
MB901379_03651 (deaD)
Enzymes [BR:
mbai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MB901379_03651 (deaD)
Messenger RNA biogenesis [BR:
mbai03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MB901379_03651 (deaD)
Ribosome biogenesis [BR:
mbai03009
]
Prokaryotic type
rRNA helicases
MB901379_03651 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_19
CMS1
P-loop_SecA
B_solenoid_dext
Motif
Other DBs
NCBI-ProteinID:
VDM90058
UniProt:
A0A3S4FPT5
LinkDB
All DBs
Position
I:complement(4190431..4192263)
Genome browser
AA seq
610 aa
AA seq
DB search
MAARVCFAERNATASFLTVRRRGLTLAPITAAAPTTITLHLLMAYPDSPPAAPPRTFADL
QIHPKVLRALTDVGYESPTAIQEATIPALMAGADVVGLAQTGTGKTAAFAIPILSRIDIA
NKATQALVLAPTRELALQVAEAFSRYGAHLPRLNVLPIYGGSSYAVQLSGLKRGAQVVVG
TPGRVIDHLERGTLDLSRVDYLVLDEADEMLTMGFAEDVERILSDTPEYKQVALFSATMP
PAIRKITTKYLHDPLEVASEAKTATAENISQRYIQVAGPRKMDALTRVLEVEPFEAMIVF
VRTKQATEEVAERLRARGLSAAAINGDIPQAQRERTIAALRDGSIDILVATDVAARGLDV
ERISHVLNYDIPHDTESYVHRIGRTGRAGRSGNALLFVSPRERHLLKAIEKATRQSLTEA
ELPTVEDVNAQRVAKFADSITDALGAPGIELFRRLVEDYERERNVPMADIAAALALQSRD
GEAFLLAPDAPPERRKERRERASSEHREKRGSGPAFTTYRISVGKRHKIGPGSIVGAIAN
EGGLHRSDFGHITIGGDFSLVELPAKLPRATLKKLERTRISGVLIDLRPDRPSDKARRND
GGKPRRKRDG
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
gtggccgcgcgggtgtgtttcgccgagcgtaacgccacagcgagtttcctgaccgtacgt
cgccgtggccttaccctcgcgccaatcaccgccgcggcaccgaccaccattacactgcat
cttctaatggcctacccggacagcccgcctgcggcgcccccacgcaccttcgccgacctg
cagattcatccgaaagtcttgcgggcgctcaccgacgtcggctacgagtcaccgacggcc
attcaggaggcgacgattccggcgctgatggccggcgctgacgtggtcggcctggcgcaa
accggcaccggcaaaacagcggcgttcgcgatcccgatcctgtccagaatcgacatcgcg
aacaaggcgacccaggccctcgtgctggcgcccacccgcgagctggccctgcaggtggcg
gaggccttcagccggtacggggcccatttgcctcggctcaacgtgctgcccatctatggc
gggtcgtcgtatgccgtgcaactgtccgggctgaagcgcggtgcgcaagtggtggtcggc
actcccggtcgggtcatcgatcacctggagcgaggcacgttggacttgtcacgggtggac
tacttggtgctcgacgaggccgacgagatgctcaccatgggtttcgccgaagatgtcgag
cgcatcctgtccgacaccccggaatacaagcaggttgccctgttttcggctaccatgccg
ccggcgatccggaagatcaccaccaagtatctgcacgatccgctggaagtcgcatcggaa
gccaaaaccgcgaccgccgaaaacatttcgcagcgctacattcaagtggcgggtccgcgc
aagatggacgcgcttacccgagtcctcgaggtcgagccgttcgaggccatgatcgtgttc
gtgcgcaccaagcaggcgaccgaggaggtcgccgaaaggctacgtgctcgcgggctttcg
gcggcggccatcaacggcgacattccccaagcccagcgggaacgaaccatcgctgcgctt
cgagacggcagcatcgacattctggttgccaccgacgtggcggcccgcgggctagatgtc
gagcgcatctcgcatgtgctcaactacgacattccgcacgacacggagtcctacgtccac
cggattggacgtaccgggcgggccgggcgctccggaaacgcgctcctgttcgtctccccg
cgcgagcgccacctgctcaaggcgatcgaaaaggccacccggcaatcgctcaccgaggcc
gagctgcctaccgtcgaggatgtcaatgcccagcgggtggcgaagttcgccgactccatc
accgacgcgctcggggccccggggatcgagttgttccgcaggctggtggaggactatgaa
cgggagcgcaatgtcccgatggctgatatagccgccgcgctggcgttgcagtcccgagac
ggagaggcattcctgctggcccccgacgctcctcccgagcggcgcaaggagcgcagggag
cgcgccagcagcgagcatagggaaaaacggggaagcggtccggctttcaccacgtaccgc
atctcggttggcaagcggcacaagatcggtccgggttcaatcgtgggtgcgatcgccaac
gagggaggcctgcatcgaagcgatttcggccacatcaccattgggggggacttctcgctg
gtggagctgccggccaagttgcctcgcgccacactcaagaagctggagcgcactcggatc
tcgggcgtgttgatcgaccttaggccggaccggccgtccgataaggcgcgtcgcaacgac
ggcggcaaaccacgccggaaacgcgacggatga
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