Methanoculleus bourgensis MS2: BN140_0526
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Entry
BN140_0526 CDS
T02189
Symbol
lig1
Name
(GenBank) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
mbg
Methanoculleus bourgensis MS2
Pathway
mbg03030
DNA replication
mbg03410
Base excision repair
mbg03420
Nucleotide excision repair
mbg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mbg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BN140_0526 (lig1)
03410 Base excision repair
BN140_0526 (lig1)
03420 Nucleotide excision repair
BN140_0526 (lig1)
03430 Mismatch repair
BN140_0526 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mbg03032
]
BN140_0526 (lig1)
03400 DNA repair and recombination proteins [BR:
mbg03400
]
BN140_0526 (lig1)
Enzymes [BR:
mbg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BN140_0526 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
BN140_0526 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
BN140_0526 (lig1)
DNA replication proteins [BR:
mbg03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
BN140_0526 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
BN140_0526 (lig1)
DNA repair and recombination proteins [BR:
mbg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
BN140_0526 (lig1)
NER (nucleotide excision repair)
Other NER factors
BN140_0526 (lig1)
MMR (mismatch excision repair)
Other MMR factors
BN140_0526 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
CysG_dimeriser
Motif
Other DBs
NCBI-GeneID:
13354133
NCBI-ProteinID:
CCJ35449
UniProt:
I7LLJ8
LinkDB
All DBs
Position
523667..525313
Genome browser
AA seq
548 aa
AA seq
DB search
MQFLEFARICEHLEGISGRLDMIEQVSAVLPGLEDEELPIFVRFIMGRVFPDWSPKKLGV
GPNLLYDAVAYVVGTKRSAVREAINATGDAGLAIEDLLATKEQTSFFVQEMDLLEVYWDF
ERVAAAEGARSQREKLLVVRKLFANARPLEGRYLARLMLEELRIGMGEGSVRDAVARAFD
IDVRLVEHAHQAMNDLGEVALLARRDPAALSRVTIEPFRPVKMMLAQAGTIAGQIEDHGE
VAVEYKYDGSRFQFHKVGNICRIYSRRLEEVTGSLPDIVMHLGEATDHDVILDGEVVAVQ
DGRPMPFQYVIRRFRRKHQVNAMMEKIEVVPRVFDILYLDGETLMDRPLAERRRILEEVL
DAHIAPQFLVTDVAGAEAIYTEALNLGHEGVMVKVPSSPYTPGVRGRLWVKVKPGVETLD
LAVIGAEWGEGRRAKMFGSFLLAVQDQGRLLPVGKVATGITDEVLADLYALLKDSVIARS
GKEVTLEPKVVFEVGYSEIQASPNYASGYALRFPRFVQVREDKSVDEVETLDALAERYGE
QKNGQGSL
NT seq
1647 nt
NT seq
+upstream
nt +downstream
nt
atgcagtttctggagtttgcccgtatatgcgagcacctggaagggatcagtgggcgcctg
gatatgatcgagcaggtcagcgccgtcctgcccgggctcgaagacgaggaactccccatc
tttgtccgcttcatcatgggccgggtctttcccgactggagccccaaaaaactcggtgtg
ggcccaaacctcctctacgacgccgtcgcctacgtcgtcggcacgaagaggagtgccgtc
cgtgaggcgatcaacgcgaccggggacgccggcctggctatcgaggacctccttgcaacc
aaggaacagacatcgttcttcgtccaggagatggacctcctggaggtctattgggatttc
gagcgggtggcggccgctgaaggagcgcggtcccagcgggagaaactcctggtggtccgg
aaactctttgccaacgcccgcccccttgaggggcggtatcttgcccggctcatgcttgaa
gagctcaggattggcatgggcgaggggagcgtccgcgacgccgtcgcccgtgcgtttgat
atcgacgtccgcctggtcgagcatgcccaccaggcgatgaacgacctcggggaggtggct
ctcctcgccaggcgggaccctgccgccctctcccgggtgacgatcgagcccttccggcct
gtgaagatgatgcttgcacaggcaggcaccatcgccgggcagatcgaggaccacggtgag
gtggcggtcgagtacaagtatgacgggagcaggttccagttccacaaggtgggcaacatc
tgccggatctactcgcggcggctggaggaggtcacggggagcctccctgatatcgtcatg
cacctcggggaggccaccgaccatgacgtgatcctggacggtgaggtggtcgctgtccag
gacggccggccgatgccgtttcagtacgtgatcaggcggttccggcggaaacaccaggtg
aatgcgatgatggaaaagatcgaggtcgtaccgcgggtctttgacatcctctatctggac
ggcgagaccctgatggaccgccctctcgccgagcggcgcaggatcctcgaggaggtgctt
gacgcacacatcgccccccagttcctggtcaccgatgttgccggggcggaggcgatctac
accgaggcgttgaacctcgggcacgagggagtgatggtgaaggtgccctcctcgccctac
accccgggtgttcggggccgtctctgggtgaaggtgaaacccggggtggagacgctcgac
cttgctgtgatcggggccgagtggggcgaagggcggcgggcgaagatgtttggctcgttc
ctgcttgcggtccaggaccagggccggcttctccccgtgggcaaggtggcgaccgggatc
acggatgaggtgctggccgacctctacgccctcctcaaggatagcgtgatcgcccgctca
ggaaaagaggtcacgcttgagccgaaggtggtctttgaggtgggctactccgagatccag
gcaagccccaactatgcgagcgggtatgcgctccgtttcccgagattcgtccaggtgcgt
gaggataagagcgtcgacgaggtcgagaccctggacgccctcgccgaacgctacggcgag
cagaagaacgggcagggatcactgtga
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integrated database retrieval system
