Methanococcoides burtonii: Mbur_1088
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Entry
Mbur_1088 CDS
T00341
Symbol
dnl1
Name
(GenBank) DNA ligase 1, ATP-dependent
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
mbu
Methanococcoides burtonii
Pathway
mbu03030
DNA replication
mbu03410
Base excision repair
mbu03420
Nucleotide excision repair
mbu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mbu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Mbur_1088 (dnl1)
03410 Base excision repair
Mbur_1088 (dnl1)
03420 Nucleotide excision repair
Mbur_1088 (dnl1)
03430 Mismatch repair
Mbur_1088 (dnl1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mbu03032
]
Mbur_1088 (dnl1)
03400 DNA repair and recombination proteins [BR:
mbu03400
]
Mbur_1088 (dnl1)
Enzymes [BR:
mbu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Mbur_1088 (dnl1)
6.5.1.6 DNA ligase (ATP or NAD+)
Mbur_1088 (dnl1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
Mbur_1088 (dnl1)
DNA replication proteins [BR:
mbu03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
Mbur_1088 (dnl1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
Mbur_1088 (dnl1)
DNA repair and recombination proteins [BR:
mbu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
Mbur_1088 (dnl1)
NER (nucleotide excision repair)
Other NER factors
Mbur_1088 (dnl1)
MMR (mismatch excision repair)
Other MMR factors
Mbur_1088 (dnl1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ABE52018
UniProt:
Q12X08
LinkDB
All DBs
Position
1166020..1167723
Genome browser
AA seq
567 aa
AA seq
DB search
MTDFKEFADVCKQIEHISSSLEMTDVVSDMLKSISTEELPVVTHFVMGDVFPAWSVEQLG
VGTSLLYSALSESSGLSLKEIEDLVRSTGDIGETAVAALGKKKKNKKKNQASLSFFSEDA
ASVSISIMDVFERFLDISRYSGAGSQSSKMRNLQFLFNSSSSEEARYLARLTIEDLRIGV
GEGIVRDAISKAFDVPAGDIERGFMLTNDLGLVAVAAKEGGIEEISKLRMELDRPIKMML
AQVTPSIEAAIKDLGMLAVEWKFDGARVQIHKKGDSINIFSRRLENVTLSLPDIVEAVKL
HVKADSAILEGEAVAVDENGAPRAFQDILKRFRRKYDVETMVREIPLTLNLFDILYLNGD
VLMDQSLLRRREQLVACVENCDSIKVDEQVLTDDVNVVNDIYAAALNGGHEGVMLKNPEA
SYSPGKRGKNWLKKKPIMETLDLVVIAAEWGYGKRANLIGSYALACFDPEDGKFLPIGKV
ATGFSDEQLAELTEVFSELIIGESGREIELKPDVVFEIAFEEIQKSTNYGSGYALRFPRL
VNVREDKSPEEAETIDRIESIYLSQRG
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacttcaaggaattcgctgatgtttgtaaacagatagaacatatctcaagttca
ctggaaatgacagatgttgtctcggatatgttaaagtcgatatcgacagaggaacttcct
gttgtgacccattttgtgatgggggacgtttttcctgcatggagtgttgaacagcttggg
gtgggtacgagtcttttgtatagtgccctttcggaatcatccggtctttccctgaaagag
attgaggaccttgtccgttccaccggtgatataggggagacagcggtagcagcacttggt
aagaagaaaaagaataagaaaaagaatcaagcatcgctctcatttttttcggaggatgca
gcttctgtctctatctccataatggatgtctttgaaaggttccttgatatttccagatat
tcaggtgcaggttcgcagagttctaagatgaggaaccttcaattccttttcaattcttcc
agctccgaagaagcacggtatcttgcccgactgactatcgaagaccttcgtattggtgtc
ggtgaaggtatcgttcgtgatgctatttcaaaagctttcgatgttccggcaggggatatt
gaacgtggttttatgttaacgaacgatctgggtcttgtggcagttgctgcaaaagagggt
ggtattgaggagatatcaaagctcaggatggagcttgatcgtccgataaagatgatgctg
gcacaggttacgcctagtattgaagctgcgatcaaggatcttggtatgctggctgtcgag
tggaaattcgatggggcaagggttcaaattcataagaaaggggattcgatcaacatcttt
tcgagaaggcttgagaatgtgacattatctctgccggatatcgttgaggcagtgaagctt
catgtgaaggcggattccgcaattctggaaggtgaggctgtagcggtcgatgaaaatggg
gctcctcgtgctttccaggatatactcaaacgcttcaggagaaagtatgatgttgaaaca
atggttcgtgagatacctttgacattgaaccttttcgatattctgtatctgaatggggat
gtactgatggaccagtctcttttaagaagaagggaacaactggtcgcatgtgtggagaac
tgtgatagcatcaaggtggatgagcaggttctcacagatgatgtgaatgttgtgaacgat
atatatgctgctgcgcttaacggtgggcacgaaggggtcatgctaaagaacccggaagct
tcgtattctcccggcaagcggggtaagaactggctcaagaagaagcctatcatggagacg
ctcgacctcgttgtcattgctgcggaatggggttatggaaaacgtgcaaatcttatcggc
tcttatgctctggcatgttttgacccggaagatggaaaattccttccgatcggcaaagta
gctacaggtttttcagatgagcagcttgctgaacttactgaggtcttttccgagcttatt
attggtgaatccggtcgggagatcgaacttaaacctgatgtggtgttcgagatcgcattc
gaggagatccagaaaagtacgaactatggttcaggatatgctctccgtttccctcgactt
gtaaatgtgagggaagataaatctccggaagaggctgaaacgatagatcgtatcgagagc
atctatttatcacagaggggctaa
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