KEGG   Methanosarcina barkeri Wiesmoor: MSBRW_2836
Entry
MSBRW_2836        CDS       T03839                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
mbw  Methanosarcina barkeri Wiesmoor
Pathway
mbw03030  DNA replication
mbw03410  Base excision repair
mbw03420  Nucleotide excision repair
mbw03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mbw00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    MSBRW_2836
   03410 Base excision repair
    MSBRW_2836
   03420 Nucleotide excision repair
    MSBRW_2836
   03430 Mismatch repair
    MSBRW_2836
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mbw03032]
    MSBRW_2836
   03400 DNA repair and recombination proteins [BR:mbw03400]
    MSBRW_2836
Enzymes [BR:mbw01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     MSBRW_2836
    6.5.1.6  DNA ligase (ATP or NAD+)
     MSBRW_2836
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     MSBRW_2836
DNA replication proteins [BR:mbw03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    MSBRW_2836
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     MSBRW_2836
DNA repair and recombination proteins [BR:mbw03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     MSBRW_2836
   NER (nucleotide excision repair)
    Other NER factors
     MSBRW_2836
   MMR (mismatch excision repair)
    Other MMR factors
     MSBRW_2836
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-ProteinID: AKB52089
UniProt: A0A0E3QM18
LinkDB
Position
complement(3697285..3698991)
AA seq 568 aa
MTSFREFAETCQAIEKISSTIDTTSRVADLLKKVDVEELPIATHFIMSEVFPAWSGEQLG
IGTSLLYVSLSKASGMPVKSIESLIRTTGDIGDTALLILKEKRKNQVTFSSFFEEQPELS
ITEVYNRFKIASEASGKGSQDIKIKNLQFLFTSSTPREAKYISRLALEELRIGVGEGVVR
DAIAKAFSVPVDVVEHAFMVTNDLGIVAATAKDGGVEALESLGIEINRPIKMMLSQISPD
IVADIKEMKEAAIEWKFDGARVQVHKAGDSVMLFSRKLENVTNSLPDLVEIIRKHVKAES
AILDGEAVAVDENGRPRAFQEILKRFRRKYDVEEKALGIPIQLNLFDIMYLNGKTLIDLP
LIERRKALESCVESSVEDSKSISVDKQVITGDLDLIEKIYKEALDAGHEGVMVKNPNSFY
SPGKRGKNWLKKKPLMETLDLVVVGAEWGFGRRANLLGSYTVACYDPKTLRFLQVGKVGT
GLTDDQLKELTEILSGLMEGGEAGGIFAIRPKIVLEIAFEEIQKSPNYDSGFALRFPRFI
RIRDDKDPEEADTIQRIGKVYSQQLKRL
NT seq 1707 nt   +upstreamnt  +downstreamnt
atgacaagtttcagggaatttgcagaaacctgccaggcgattgaaaaaatctcgagtaca
attgatactacaagtcgggttgctgaccttcttaaaaaggttgatgttgaagagctgccc
attgcaactcattttattatgagtgaggtttttcctgcctggagtggagaacaattggga
attggcactagcctgctgtatgtttccctttccaaagcctccggaatgccagtaaaaagt
atagaatctcttattcggactaccggagatataggggacacagcccttctgatcctcaag
gagaaaaggaaaaatcaggttactttttcctcttttttcgaagaacagcccgaactctca
ataaccgaagtttataaccgttttaaaattgcctccgaagcctcaggaaaaggttcacag
gacattaagataaagaatcttcagttcctctttacttcctcaactccaagggaagcaaaa
tatatctccaggcttgcgcttgaggaactccgcataggcgtcggagaaggcgttgtaaga
gatgcaattgcaaaagctttttccgtgcctgtggatgtggttgagcacgcctttatggtt
acgaatgacctggggatagtcgctgcaactgccaaggacggcggggtggaagccctagag
agtctcgggattgagatcaaccgcccgatcaagatgatgctctcacagatcagccctgac
atagttgctgacataaaggaaatgaaggaggctgcaatcgaatggaaattcgatggggca
agagtccaggtccataaggctggagattcggttatgcttttttcacgaaagcttgaaaat
gtcacaaattccctccctgaccttgtagagataatccgcaaacatgtaaaggccgaatct
gcaattcttgatggagaagccgtcgcagtggacgaaaatggaaggcccagggcatttcaa
gagatccttaaacgtttccggcgcaagtacgatgtggaagaaaaagcccttggcatccct
attcagctaaacctttttgacataatgtacttaaacggaaaaacgctgatagacctgcct
ctgattgaacggcgaaaagcgcttgagtcctgcgtggaaagctcggttgaggattcaaag
tccatctccgtggacaaacaggtgataaccggagacctcgatcttatagagaagatctat
aaggaggctttagacgccgggcacgaaggagttatggtcaaaaacccgaattcgttttat
tcccctggcaaacgcggcaaaaactggcttaagaaaaagcctcttatggaaacccttgac
cttgtagttgttggagccgaatggggatttggcaggcgtgcaaacctcctgggttcttat
acggttgcctgttatgacccaaaaaccctgcgttttctccaagtcggtaaagtgggtacg
ggcctaaccgacgatcagttaaaggaactcacagagatactttccgggctcatggaaggt
ggagaggcaggcggtatatttgcaatccggccgaaaatagtccttgaaatcgcctttgag
gaaatccagaaaagccccaattatgattcaggctttgcgcttcgttttccacgctttatc
cgcatccgggacgataaagaccccgaagaagccgatacgatacagagaattggaaaggta
tatagccagcagttgaaaaggttgtaa

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