KEGG   Methanosarcina barkeri MS: MSBRM_1019
Entry
MSBRM_1019        CDS       T03838                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
mby  Methanosarcina barkeri MS
Pathway
mby03030  DNA replication
mby03410  Base excision repair
mby03420  Nucleotide excision repair
mby03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mby00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    MSBRM_1019
   03410 Base excision repair
    MSBRM_1019
   03420 Nucleotide excision repair
    MSBRM_1019
   03430 Mismatch repair
    MSBRM_1019
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mby03032]
    MSBRM_1019
   03400 DNA repair and recombination proteins [BR:mby03400]
    MSBRM_1019
Enzymes [BR:mby01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     MSBRM_1019
    6.5.1.6  DNA ligase (ATP or NAD+)
     MSBRM_1019
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     MSBRM_1019
DNA replication proteins [BR:mby03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    MSBRM_1019
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     MSBRM_1019
DNA repair and recombination proteins [BR:mby03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     MSBRM_1019
   NER (nucleotide excision repair)
    Other NER factors
     MSBRM_1019
   MMR (mismatch excision repair)
    Other MMR factors
     MSBRM_1019
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-ProteinID: AKB54017
UniProt: A0A0E3QTZ5
LinkDB
Position
complement(1344399..1346105)
AA seq 568 aa
MTSFREFAETCQAIEKISSTIDTTSRVADLLKKVDVEELPIATHFIMSEVFPAWSGEQLG
IGTSLLYVSLSKASGMTVKSIESLIRTTGDIGDTALLILKEKRKNQVTFSSFFEEQPELS
ITEVYNRFKIASEASGKGSQDIKIKNLQFLFTSSTPREAKYISRLALEELRIGVGEGVVR
DAIAKAFSVPADVVEHAFMVTNDLGIVAATAKEGGVEALESLGIEIKRPIKMMLSQISPD
IVADIKEMKEAAIEWKFDGARIQVHKAGDSVMLFSRKLENVTNSLPDLVEIVRKHVKAES
AILDGEAVAVDENGKPRAFQEILKRFRRKYDVEEKALGIPIQLNLFDIMYLNGKTLIDLP
LIERRKALESCVESSVEDSKSISVDKQVITGDLELIEKIYKEALDAGHEGVMVKNPNSFY
SPGKRGKNWLKKKPLMETLDLVIVGAEWGFGRRANLLGSYTVACYDPENLRFLQIGKVGT
GLTDDQLKELTEILSGLMEGGEAGGIFAIRPKIVLEIAFEEIQKSPNYDSGFALRFPRFI
RIRDDKDPEEADTIQRIGKVYSQQLKRL
NT seq 1707 nt   +upstreamnt  +downstreamnt
atgacaagtttcagggaatttgcagaaacctgccaggcgattgaaaaaatctcgagtaca
attgatactacaagtagggttgctgaccttcttaagaaggttgatgttgaagagctgccc
attgcaactcattttattatgagtgaggtttttcctgcctggagcggagaacaattggga
attggcactagcctgctgtatgtttcactttccaaagcctccggaatgacagtaaaaagt
atagaatctcttattcggactaccggagatataggggacacagcccttctgatcctcaag
gagaaaaggaaaaatcaggttactttttcctctttcttcgaagagcagcccgaactctca
ataaccgaagtttataaccgttttaagattgcctccgaagcctcaggaaaaggctcacag
gacattaagataaagaatcttcagtttctctttacttcctcgactccaagggaagcaaaa
tatatctccagacttgcgcttgaggaacttcgcataggcgtcggagaaggcgttgtaagg
gatgcaattgcaaaagctttttccgtgcctgcggatgtggttgaacacgcctttatggtt
actaatgacctggggatagtcgctgcaactgccaaggagggcggggtggaagccctggag
agtctcgggattgagatcaaacgcccgatcaagatgatgctctcacagatcagccctgac
atagttgctgacataaaggaaatgaaggaagctgcgatcgaatggaaattcgatggggca
agaatccaggttcacaaggccggagattcggttatgcttttttcacgaaagcttgaaaat
gtcacaaactcccttcctgaccttgtagaaatagtccgcaaacatgtaaaggccgaatcc
gcaatccttgacggagaagctgttgcagtggacgagaatggtaagcccagggcatttcag
gagatccttaaacgtttccggcgcaagtacgatgtggaagaaaaagcccttggcatccct
attcagctaaacctttttgacataatgtacttaaacggaaaaacgctgatagacctgcct
ctgattgagcggcgaaaagcgcttgaatcctgcgtggaaagctcggttgaggattcaaaa
tccatctccgtggacaaacaggtgataaccggagacctcgaacttatagagaagatctat
aaggaagccttagatgccgggcacgaaggagttatggtcaaaaatccgaattcgttttat
tcccctggtaaacgtggcaaaaactggcttaagaaaaagcctcttatggaaacccttgac
cttgtaatcgtaggagccgagtggggctttggcaggcgtgccaacctcctgggttcttat
acggttgcctgttatgacccagaaaacctgcgttttctccagatcggcaaagtgggtaca
ggcctgaccgacgatcagttaaaggaactcacagagatactttccgggcttatggaaggc
ggagaggcaggcggcatatttgcaatccggccgaaaatagtcctggaaatcgcctttgag
gaaatccagaaaagccccaattatgattcaggctttgcattgcgtttccctcgctttatt
cgtatccgggacgataaagatcccgaagaagccgatacgatacagagaattggaaaggta
tatagccagcagttgaaaaggttgtaa

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