Mus caroli (Ryukyu mouse): 110286404
Help
Entry
110286404 CDS
T05910
Symbol
Col4a6
Name
(RefSeq) collagen alpha-6(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
mcal
Mus caroli (Ryukyu mouse)
Pathway
mcal04151
PI3K-Akt signaling pathway
mcal04510
Focal adhesion
mcal04512
ECM-receptor interaction
mcal04820
Cytoskeleton in muscle cells
mcal04926
Relaxin signaling pathway
mcal04933
AGE-RAGE signaling pathway in diabetic complications
mcal04974
Protein digestion and absorption
mcal05146
Amoebiasis
mcal05165
Human papillomavirus infection
mcal05200
Pathways in cancer
mcal05222
Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
110286404 (Col4a6)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
110286404 (Col4a6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
110286404 (Col4a6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
110286404 (Col4a6)
09150 Organismal Systems
09152 Endocrine system
04926 Relaxin signaling pathway
110286404 (Col4a6)
09154 Digestive system
04974 Protein digestion and absorption
110286404 (Col4a6)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
110286404 (Col4a6)
09162 Cancer: specific types
05222 Small cell lung cancer
110286404 (Col4a6)
09172 Infectious disease: viral
05165 Human papillomavirus infection
110286404 (Col4a6)
09174 Infectious disease: parasitic
05146 Amoebiasis
110286404 (Col4a6)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
110286404 (Col4a6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
mcal04147
]
110286404 (Col4a6)
00536 Glycosaminoglycan binding proteins [BR:
mcal00536
]
110286404 (Col4a6)
Exosome [BR:
mcal04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
110286404 (Col4a6)
Glycosaminoglycan binding proteins [BR:
mcal00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
110286404 (Col4a6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
110286404
NCBI-ProteinID:
XP_029329483
Ensembl:
MGP_CAROLIEiJ_G0033458
UniProt:
A0A6P7QKP0
LinkDB
All DBs
Position
X:complement(129680091..129998959)
Genome browser
AA seq
1691 aa
AA seq
DB search
MHPGLWLFLVSLCLTKELAEAGQKMSYGKPCGSQDCHGVCTCSPEKGARGHPGPIGTQGP
AGPEGFTGPTGLSGLKGERGSPGPLGPYGSKGDKGPIGIPGFVGISGIPGHPGQPGPRGP
PGPDGCNGTQGAVGFPGPDGYPGILGPPGLPGHKGAKGEPAPFQGSITGMRGDPGLPGLD
GIPGPSGSSGSPGDAGPIGPPGLQGPPGPPGLPGPDGNMGLGFQGEKGVKGDVGLPGPAG
PPPSTGELEFMGFPKGKKGSKGEPGPPGFPGMSGPPGVPEFGSTGEKGERGILGLPGPRG
PMGSEGIQGHPGRQGKKGTSGFPGIKGFPGIKGEKGDIGVRGPDSFTDADGAVISGYPGD
PGVLGLPGLRGDEGVQGQRGPSGTPGLPSLTGLPGALGPQGFPGLKGDQGNSGRTTFGEA
GLPGRVGLPGLPGLPGPSGPPSRTFETGHLSTIEPGFPGLQGEQGPKGHQGLKGVKGDSG
FCACEGGAPNIGPHGEPGLPGIQGPIGLQGFKGTRGDAGSRGASGPAGTPGLFGPRGQTG
LKGKKGEPTVSRGLKMSGDKGDPGPQGTPGLAGTPGKDGRPGLPGLPGIQGDGGSGFPGE
RGLPGLPGEKGHDGPTGPPGIGLPGPPGPRGLPGDKGVDGLPGQQGLRGAQGVTLPCIIP
GSYGPSGFPGAPGFPGSKGSRGLPGIPGKPGTHGSKGGPGSPGLMHLPGLPGFPGARGEK
GLPGFPGLPGKDGYPGKAGSPGLPGFKGAAGDIFGAENGASGEQGLQGLPGDKGFPGDSG
LPGPKGLNGKPGMLGPKGERGNPGTSGPPGQPGPSGSTDPFGIKGTSGFPGAPGLPGISG
HPGKKGQRGDIGQPGSTGKRGLPGIKGLPGPQGSPGFLGSPGLSGVTGLPGIEGQKGEKG
SSGPVGFPGFPGLPGLPGADGLKGFSGSFGKVGQPGQAGTSGEKGDRGDPGPVGISSPRP
PMLNLWFKGEKGSRGSAGSDGFPGPRGDKGEPGIPGLPGPPGATGQTNTIKGLNGRPGSP
GSMGRKGLPGLKGSLGIAGFPGMPGKSGSQGLAGTSGLLGATGIPGLKGDQGQTLGISGS
PGPKGQPGELGFKGVKGKDGLVGDRGYPGNKGDGGKVGITGDPGFPGSPGLQGISGMNGD
PGLPGSSGHLGSIGRPGPSGLIGPKGFPGAPGLHGLNGLPGTKGTHGTPGTSITGVPGPA
GLPGPKGERGVPGIAIGDPGKQGSRGQKGDQGSPGLQGPAGTPGAPGISLPSVIAGQPGD
PGRPGLDGERGRPGPPGPPGPPGPSSDQGDPGDSGFPGIPGLQGFKGNQGLPGFSGLSGE
LGLKGMRGEPGLMGTPGKIGQPGDPGFPGMKGKAGPRGFSGPQGAPGHAPIAEAMQVPPG
SLGQPGIDGIPGLIGDPGTQGSVGLQGSKGLPGIPGKDGPSGLPGPSGILGDPGLPGLQG
PPGFEGAPGNQGPIGQPGMPGHSVRVGYTLVKHSQSEQVPLCPTGMSRLWVGYSLLFVEG
QEKAHNQDLGFAGSCLPRFSTMPFIYCNINEVCHYARRNDKSYWLSTTAPIPMMPVGQTQ
IPQYISRCSVCEAPSQAIAVHSQDITVPQCPLGWHSLWIGYSFLMHTAAGAEGGGQSLVS
PGSCLEDFRATPFIECSGARGTCHYFANKYSFWLTTVEERGQFREEPVSETLKTGQLHTR
VSRCQVCMKTL
NT seq
5076 nt
NT seq
+upstream
nt +downstream
nt
atgcaccctggattgtggctgttcctggtttccttatgcttgaccaaagaactggcagaa
gcgggacagaagatgtcctatggaaagccatgtgggagccaagattgccatggagtctgt
acatgctctcctgagaaaggagcaagagggcaccctggaccaattggaactcaaggtcca
gctggtcctgaagggtttactggtccaactggtttatcaggtttgaaaggagaaagaggc
tccccaggccctctgggaccatatggatcaaaaggagataagggtcccattggaattcct
ggctttgttggcatcagtgggattccgggccaccctggacaaccaggtccaagaggtcca
cctggcccagacggctgtaatggaactcaaggagctgttggatttccaggccctgatggc
taccctgggattttaggaccacctgggctgcctggtcacaaaggtgcaaaaggagaacct
gctccttttcaaggcagcattacaggaatgaggggggatcctgggctgcctggactagat
ggaatccctggtccatcaggttcctccggctctcctggagatgcaggacccataggacca
ccaggcttacaaggtcccccagggccccccggacttcccggtcctgatggaaatatgggg
ttaggtttccaaggagaaaaaggagtcaagggggatgttggcctccctggccctgcagga
ccacctccatctactggggaactagaattcatgggattccccaaaggaaagaaaggttcc
aagggtgagccaggacctccaggtttcccaggaatgagtggccctccaggtgtcccggaa
tttggatctactggagaaaaaggagaaagggggatccttggtttgccaggacctaggggt
cccatgggttcagaaggaatacaaggtcatccagggagacagggaaagaaggggacttca
ggttttcctgggattaaggggttcccaggaattaagggtgaaaagggagacattggtgtg
cgaggcccagacagtttcactgatgcagatggcgctgtgatctcaggttatcctggagac
cctggtgtgctgggccttccaggccttagaggagatgaaggcgtccaaggccaacgtggc
ccttctggaacccctggcctcccatcattaacaggtcttccaggtgccctagggcctcag
ggatttccaggcctgaaaggagaccaaggaaactcaggacgtaccacctttggagaagct
ggcctacctggcagggttggtttaccaggtttaccaggcctgccaggcccatcaggccca
cctagtcgcacatttgagaccggacatctgtccaccatagagcctgggttccctggtctc
caaggagaacaaggtccaaaaggacatcaaggccttaaaggagtaaaaggagactctggt
ttttgtgcttgtgaaggtggtgcacccaacattggaccacatggggaaccaggcctgcct
gggatacaaggtcccattggtctacagggttttaaggggactagaggagatgcaggctca
aggggagcgtctggtcctgcagggacgccagggctatttggacctagaggtcagactggc
ctcaaaggaaagaaaggagaaccaactgtcagtagaggattaaaaatgtcaggggacaaa
ggtgaccctggtcctcaggggaccccaggcttggcaggaactccgggcaaggatggaaga
ccaggtttaccaggcctcccaggcattcagggagatggtgggtctggcttcccaggtgaa
agagggttaccaggacttcctggtgaaaaaggccatgatggtccaactggaccaccagga
attgggctgccaggacctcctgggccccgtggacttcctggagataaaggagtagatggg
ttaccagggcaacaaggcctccgtggagctcaaggagtcaccttgccttgtatcatccct
gggtcatatggtccatcaggatttcctggagctcctggattcccaggctctaagggatct
cggggcctccctggaattccaggcaagcctggcactcacggaagcaaaggagggcctgga
agtccagggttaatgcatctcccaggattgccagggtttcctggagctcgtggggagaag
ggattgcctgggtttcctgggcttcctggaaaagatggctaccctggaaaagctggcagt
ccagggttaccaggtttcaagggagctgctggtgacatatttggtgctgaaaatggtgct
tcgggggagcaaggcctacagggattgccaggggacaaaggatttcctggagactctggc
cttccaggacccaagggtttgaatgggaaacctggtatgctaggccccaagggtgagcgg
ggcaaccctggaacatcaggaccaccaggtcagccaggaccttcagggtctactgaccca
tttggcatcaaaggcacatctggattcccaggagcaccaggccttccaggcatctcaggg
caccctggaaagaaaggtcaaagaggagacataggtcagcctgggtcaactggaaaaaga
ggtctacctgggataaaaggccttcctggtcctcaagggtcacctggcttcctggggagc
ccaggtttgtcaggcgtcactgggttgccaggcatcgaaggccaaaagggtgaaaagggg
tcctctgggccagtaggatttcctgggttccctggtcttcctggtcttcctggagctgat
ggattaaagggattttctgggtcatttggaaaggtgggacaacctggacaggctggtact
tccggagagaaaggagacagaggggatccagggccagttggcatatctagtccaagacct
ccaatgctaaacctttggttcaaaggagaaaaaggctctcgaggttctgctggatcggat
ggatttcctgggcccagaggtgacaaaggagagcctggcatcccagggttaccaggtcca
cctggagctactggacaaaccaataccatcaaagggctcaatgggaggccaggttcccct
ggatctatgggaagaaagggattacctggcctgaaggggtctctggggattgcaggtttc
ccaggaatgccaggaaaaagtggttcacaggggctcgctgggacttctggcctcctggga
gcaactggtatcccaggtttaaaaggagatcaaggccaaacacttggcatttctggaagc
ccaggacccaagggacagcctggagaattaggttttaaaggtgtcaaaggaaaagatgga
ctagttggtgatagaggttacccaggaaacaaaggtgatggtggaaaagttggaattact
ggagatcctggcttccctggctccccaggacttcaagggatttcaggtatgaatggagac
ccaggcctcccaggttcctctggccatctggggtcaattggccgccctggaccctcaggc
ttaataggacctaaaggattccctggagctcctggtttacatggactgaatggacttcca
ggcaccaaaggcacccatggcactccaggaaccagtattactggtgttcctgggccggct
ggcctgcctggtcccaaaggggaaaggggagtgccaggaattgccatcggagatccaggg
aaacaaggctcaaggggacaaaaaggtgaccaaggttccccaggtcttcaaggtcctgct
ggtacccctggagccccaggcatctccttgccctcagtcatagcaggacagcctggtgac
cctgggcggccaggcctagatggagaacgaggccgcccaggccctccaggtcctccaggt
ccccctgggccatcctcagatcaaggcgatcctggagactctggcttccctggaattcca
ggccttcaagggttcaagggaaaccaaggacttccaggtttctctggcctctctggagag
ctagggctaaaaggcatgagaggggaacctggcctcatggggactcctggcaagatcggg
caaccaggagacccaggatttcctgggatgaaggggaaggcgggaccaagaggcttttcc
ggcccacagggagctccaggacacgcaccaattgctgaagctatgcaggttcctccagga
tctttgggtcagccaggcattgatggtatcccaggcctcataggagaccctgggactcaa
ggctctgtgggtctgcaaggttccaaaggcctacctggcatccctgggaaggatggcccc
agtgggctcccaggcccatctggaatccttggtgatcctggtctccctggactacaagga
cctccaggatttgaaggagctccaggaaatcagggccccattgggcagcctgggatgcct
gggcacagtgtcagagtgggctacacactagtaaaacacagtcagtcagaacaggtgcca
ctatgccccactgggatgagccggctctgggtgggttacagcttgctcttcgtggagggg
caggagaaagcccataaccaggatctgggatttgctggctcctgcctgccccgattcagc
accatgcccttcatatactgcaacatcaatgaagtgtgccactatgccagacgcaatgat
aaatcctactggctttccactactgcccccattcccatgatgcctgtgggccagacccag
attccccagtatatcagccgctgctctgtatgtgaggcaccctcacaagccattgctgta
cacagtcaggacatcaccgtcccacagtgccctctgggctggcacagcctctggatcgga
tactccttcctcatgcacactgctgctggggctgagggtggaggccagtccctagtctcc
cctggctcctgtcttgaggacttccgggccactcctttcatcgagtgcagcggcgcccgt
ggtacatgccactactttgccaacaagtacagtttctggctgacaacggtggaggagaga
gggcagtttcgggaagagcccgtgtctgagacgctgaaaactgggcagcttcacaccagg
gtgagccgctgccaggtgtgtatgaaaaccctgtag
DBGET
integrated database retrieval system
