Mus caroli (Ryukyu mouse): 110293893
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Entry
110293893 CDS
T05910
Symbol
Nup54
Name
(RefSeq) nucleoporin p54 isoform X2
KO
K14308
nuclear pore complex protein Nup54
Organism
mcal
Mus caroli (Ryukyu mouse)
Pathway
mcal03013
Nucleocytoplasmic transport
mcal05014
Amyotrophic lateral sclerosis
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
110293893 (Nup54)
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
110293893 (Nup54)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcal03019
]
110293893 (Nup54)
Messenger RNA biogenesis [BR:
mcal03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
110293893 (Nup54)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup54
Nup54_C
XhlA
Motif
Other DBs
NCBI-GeneID:
110293893
NCBI-ProteinID:
XP_021017417
Ensembl:
MGP_CAROLIEiJ_G0027417
UniProt:
A0A6P5PP10
LinkDB
All DBs
Position
5:complement(85534154..85554130)
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AA seq
508 aa
AA seq
DB search
MAFNFGAPSGTSGTSTATAVPAGGFGGFGTTTTTAGSAFSFSAPTNTGSTGLLGGTQNKG
FGFGTGFGTTTGTGTGLGTGLGTGLGFGGFNTQQQQQQTSLGGLFSQPTQAPAQSTQLIN
TASALSAPTLLGDERDAILAKWNQLQAFWGTGKGYFNNNIPPVEFTQENPFCRFKAVGYS
CMPNNKDEDGLVVLIFNKKETDIRSQQQQLVESLHKVLGGNQTLTVNVEGIKTLPDDQTE
VVIYVVERSPNGTSRRVPATTLYAHFEQANIKAQLQQLGVTLSMTRTELSPAQIKQLLQN
PPAGVDPIIWEQAKVDNPDSEKLIPVPMVGFKELLRRLKVQDQMTKQHQTRLDIISEDIS
ELQKNQTTTMAKIAQYKRKLMELSHRTLQVLIKQEIQRKSGYAIQADEEQLRVQLDTIQG
ELNAPTQFKGRLNELMSQIRMQNHFGAVKSEEKYYIDADLLREIKQHLKQQQEGLSHLIS
IIKDDLEDIKLVEHGLNETIHSRGGVFS
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atggctttcaattttggggctccttcgggcacttcgggcacctctacagccaccgcggta
ccggcgggtgggtttggaggatttggaacaacaactacaactgcaggctctgccttcagc
ttttcagccccaacaaacacaggcagtacaggccttctcggtggcactcagaacaaaggt
tttggctttggtactggttttggcacaacgacgggaactggcactggtttaggcactggt
ttgggaactggacttggatttggaggatttaatacccagcagcagcagcagcagacttct
ttaggtggtctcttcagtcagcctacacaggctcctgcacagtccacccagctcatcaac
actgccagcgcactttctgctccaacgctactgggggatgagagagatgccatcttggca
aagtggaaccagttgcaggccttctggggaacaggaaaaggatatttcaataataacatt
cctccagtggagtttacacaggaaaatcccttttgccgatttaaggctgtaggctatagt
tgtatgcccaataataaagatgaagatggactagtagttttaattttcaacaaaaaagaa
acagatattagaagccaacaacagcaattggtagaatcattgcataaagttttgggagga
aaccagacccttacggtcaatgtggagggcattaagacgttgccggatgatcagacggaa
gttgtcatttatgttgttgagcgttctccaaatggcacctcgagaagagttccagcgaca
acactgtatgcccactttgagcaagccaacattaaagcccagctgcagcagcttggggtg
accctttctatgaccaggacagagctgtctcccgctcagatcaagcagctcttacaaaac
cctcccgcaggtgttgatcctattatttgggaacaggccaaggtggataacccagactct
gaaaagttaattcctgtaccaatggtgggtttcaaagaattgcttcgaagactgaaggtt
caagatcagatgactaagcagcatcagaccagactagatatcatatctgaagatattagt
gaactgcaaaagaatcaaactacaactatggccaaaatagcacaatacaagaggaaactg
atggagctctcccacaggaccttacaggtcctaatcaaacaggaaatccaaaggaagagt
ggctatgcgatccaggctgatgaagagcagttgcgggttcagctagatactattcaaggg
gaactgaatgcacccactcagttcaaaggtcggctgaatgagctcatgtcccagatcagg
atgcagaatcattttggagccgtgaaatctgaagaaaagtactacatagatgcagacctg
ttacgagaaatcaaacagcatttgaaacaacaacaggaaggccttagccacttgattagc
atcataaaagatgacctcgaagacataaaactggtagaacatggattgaatgagaccatc
catagcagaggcggtgtctttagctga
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