Mus caroli (Ryukyu mouse): 110299809
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Entry
110299809 CDS
T05910
Symbol
Chd9
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 9 isoform X1
KO
K14438
chromodomain-helicase-DNA-binding protein 9 [EC:5.6.2.-]
Organism
mcal
Mus caroli (Ryukyu mouse)
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
mcal03036
]
110299809 (Chd9)
Chromosome and associated proteins [BR:
mcal03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
110299809 (Chd9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
BRK
Helicase_C
Chromo
ResIII
DEAD
HDA2-3
Myb_DNA-bind_7
Motif
Other DBs
NCBI-GeneID:
110299809
NCBI-ProteinID:
XP_021025338
Ensembl:
MGP_CAROLIEiJ_G0031364
UniProt:
A0A6P5Q0X7
LinkDB
All DBs
Position
8:82365397..82586783
Genome browser
AA seq
2888 aa
AA seq
DB search
MTDPMMDFFDDANLFGETLEGLSDDAFVQPGPVSLVDELNLGAEFEPLHIDSLNHVQGTP
THQKMADFEQLSQFDSMKFHPVNQSFGSPVEHVLSPHSQFNCSPIHPPNQPNGLFQDVAD
GSPMWGHQTATGLANQNGSPFHQPGHSHSLHQNKSFVAHHDFALFQASEHQTQCSSLHSQ
QNRSNLNPGQNSLGQAKNFLDANVSGAHRVNVNHLSTAPSSQQTLPVQFSPTANPPAHFL
KCSSHQEGNYNRPSPSMTSCSVSNSQQFPSHYSFSSGHVSPSSLLQSSAGLAPGHTNQAL
SDFAGSNSFSPHRGMKQEPTQHLLNPTPSLNSSNFQILHSSHPQGNYSNSKLSPVHMNFP
DPVDAGPPVGHFNDHAETNGFSSLEENLLHHVEAHAEPFAGLDPEDLLQEGLLPQFDESP
FGQDNSNHVLDHDLDRQFTSHLVSRPSDMAQTQLQYQARGWPSPLSTNHQHLHSRNHLCL
QRQPPSSKKSDGSGTYTKLQNTQVRVMSEKKPRKRVESESKQEKANRIISEAIARAKERG
ERNIPRVMSPENFPSASVEGKEEKRGRRMKSKPKDRDNKKPKTCSKLKEKTKIGKLIITL
GKKHKRRNESSDELSDAEQRSQHTFKEQHSQKRRSNRQIKRKKYAEDAEGKQSEEEVKGS
LRVKRNSAPPPGEQPLQLFVENPSEEDAAIVDKILACRTVKKEVSPGVMLDIEEFFVKYK
NYSYLHCEWATEQQLLKDKRIQQKIKRFKLRQAQRAHFLADMEEEPFNPDYVEVDRILEV
SFCEDKDTGESVIYYLVKWCSLPYEDSTWELKEDVDLAKIEEFEQLQASRPDTRHLDRPP
SNIWKKIEQSREYKNGNQLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFLYE
ILLTGIRGPFLIIAPLSTIANWEREFRTWTDINVVVYHGSLISRQMIQQYEMYFRDSQGR
IIRGAYRFQAIITTFEMILGGCGELNAIDWRCVIIDEAHRLKNKNCKLLEGLKLMNLEHK
VLLTGTPLQNTVEELFSLLHFLEPLRFPSESTFMQEFGDLKTEEQVQKLQAILKPMMLRR
LKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFSFLSKGAGQTNVPNLVNTMMELR
KCCNHPYLIKGAEEKILGEFRDTYNPSASDFHLQAMIQSAGKLVLIDKLLPKMKAGGHKV
LIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAG
GLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLVTRNSYEREMFDRAS
LKLGLDKAVLQSMSGRDSNVSGIQQLSKKEIEDLLRRGAYGAIMEEEDEGSKFCEEDIDQ
ILLRRTKTITIESEGRGSTFAKASFVASGNRTDISLDDPNFWQKWAKKAELDIDTISGRN
SLVIDTPRIRKQTRPFSATKDELAELSEAESEGEEKPKLRRPCDRSGGYGRTECFRVEKN
LLVYGWGRWREILSHGRFKRQLNEHDVEVICRALLAYCLVHYRGDEKIKGFIWDLITPTE
DGQTRELQNHLGLSAPVPRGRKGKKVKTQTSSFDIQKAEWLRKYNPEQLLQDEGYKKHVK
HHCNKVLLRVRMLYYLKQEVIGNESQKVFDGVDASDIDVWVPEPDHSEVPAAWWDFDADK
SLLIGVFKHGYEKYNTIRADPALCFLERVGKPDDKAVAAEQRANDYMDGDVEDPEYKPAP
AIFKDDIEDDVSSPGDLVIADGEGQLMEGDKVYWPTPSALTTRLRRLITAYQRTNKNRHI
QQIQPTFSVPANAMQPLYEEAALNPKMAAKIERQQRWTRREEADFYRVVSTFGVVFDPDR
GQFDWTKFRALARLHKKTDNSLEKYLCAFMSMCRRVCRLPSKEELVDPNIFIQPITEERA
SRTLYRIELLRKVREQALRHPQLFERLKLCHPNPDLPIWWECGSHDRDLLIGAAKHGVSR
TDYHILRDPELSFMAAQRNYNQSKAAHSRTATPLLQQYQVALSASPLTSLPRLLGAKGTL
LEDMKVKSESLTEEPQSSEEESMSSMETRTRVKSEPVSPKNGVLSQATGDQKSGGKSETD
RRMVAARTEPLTPNPASKKQRVHKRGSESSSDSDSDSERSSCSSRSSSSSSSSSCSHSRS
GSSSSSSSSCSSASSSSSSSSSSSSSSSSSSSEESDSEEDVQKREGTPHGKAYDEESVAS
LSTTQDETQDSFQANNGTPEPACLLQGGYTLAASYWPKDRVMINRLDSICQTVLKGKWPS
ARRHYDANTVASFYTTKLLDSPGAATEHSEPSVPTPPAVAVKEEHEQSAQMSKVKKHVRE
KEFTVKIKDEGGLKLTFQKQGLAQKRPFDGEDGTLGQQQYLTRLRELQSTSETSLVNLPK
SVPASGTSIQSTLGANGVILDSQPIVKKRRGRRRNVEGADILFLNRNKPPNHIPTGMNPA
LSYPQPQRIPDTESPVPVINLKDGTRLAGDDAPKRKDLDRWLKEHPGYVEDLGAFIPRVQ
LHEGRPKQKRHRCRNPNKLDVNSLTGEERVQLINRRNARKVGGAFAPPLKDLCRFLKENS
EYGVAPEWGDVVKQSGFLPESMFERILTGPVVREEVSRRGRRPKSGIAKATAAAAAAAAP
AGSVPGNPLLANGLLPGMDLTALQALQQNLQNLQSLQVTAGLMGMPAGLSPGGETKNMAA
MFPMLFSGMAGLPNLLGMGGLLSKTAESGAEEKRGNDSKELEGKKERTESQSSENGGERC
VPGSPSTSSTAALNSAAAAKPIALNPLLLSNILYPGMLLTPGLNLHLPTLSQSNTFDVQK
NKSSDLDSSKSIEIKEEDSRVRDQEEKGGTEPSPLNENSTDEGSERASSGSDSSSSSSSE
DSDSSNED
NT seq
8667 nt
NT seq
+upstream
nt +downstream
nt
atgacagacccaatgatggacttttttgatgatgctaatctctttggtgagactttagaa
ggcttgtcggatgatgcatttgtacagccgggacctgtctcactggttgatgaactgaac
ttgggtgcagagtttgagcctttgcacatagactcactaaaccatgttcaaggtactcca
acacaccagaagatggcagattttgaacagttaagtcagtttgactcgatgaagtttcat
ccagttaaccaatctttcggcagtccagttgaacacgtgttatctccacactctcaattt
aattgctctccaattcatcccccaaaccagcccaatggcttgtttcaagatgtagcagat
ggcagtccaatgtggggtcaccagacagctactggcctcgctaatcaaaatggatccccc
tttcaccaaccaggacattcacactctctgcatcaaaataaaagctttgtggcgcaccat
gactttgccttatttcaggccagtgaacatcaaacacagtgttcttcccttcactcacaa
caaaacagaagtaaccttaacccagggcaaaactctcttggccaggctaaaaattttcta
gacgctaatgtttccggcgcacacagagttaacgttaaccacctctccactgccccctcc
tcacagcagactcttccagtgcagttttctccgactgcaaaccctcctgcacacttcctc
aagtgcagcagtcaccaggaaggcaactataacagaccttctccaagtatgacttcctgt
tctgtgagtaactcgcaacagttcccttcacactattccttctccagtggtcacgtgtca
ccaagcagtctccttcagtcatctgcaggtctcgctcccggccatacaaatcaggcttta
tctgattttgctggaagtaactccttttctcctcataggggaatgaagcaagaacccaca
cagcatctcctgaaccccactccatctctgaattcaagtaattttcaaattttgcattcg
tcacatcctcagggtaattatagcaactcaaaattatcgcccgtgcacatgaacttccca
gatcctgttgacgcaggacctccagtgggtcatttcaatgaccacgcggaaactaatggt
ttctcatctttagaagagaatttacttcatcacgtagaagctcatgcagaaccatttgca
ggacttgacccagaagacctcctgcaggagggtctcctcccccaatttgacgaatcacca
tttggacaagataattcaaatcatgttttagatcatgaccttgaccgccagttcacttcg
catcttgtctcgaggccttctgacatggctcaaactcagctgcaatatcaggctcggggc
tggccttccccactgtctaccaaccatcaacatttacacagcagaaatcatctatgttta
cagcggcagcctccatcttccaagaagagtgatggttctgggacatacactaagctgcag
aatacccaggtgagggtcatgtctgagaagaagccacgaaaaagggtggaatcagaaagc
aagcaagaaaaggctaatcgtataatatcagaggccatagcaagagcaaaggaacgaggg
gaacgtaatattccacgagtaatgagccctgagaactttcctagtgcttcagtcgaaggg
aaagaagaaaagagaggtcggaggatgaaatctaagccaaaagacagagacaacaaaaaa
ccaaaaacatgttctaagttgaaagagaagacaaaaattggcaagctcatcattactttg
ggtaagaaacacaagagaaggaacgagtcttccgatgagctgtctgatgccgagcagagg
tcccagcacacgttcaaagagcagcactctcaaaaaagaagatcaaatcgacaaattaag
aggaaaaaatatgcagaagatgcagaaggaaagcaatctgaagaagaagtgaaaggcagt
ctgagagttaagaggaactcggctcctccgcctggagagcagcctctgcagctgtttgtg
gaaaatccaagtgaagaagatgctgcaattgtagacaaaatactagcttgtaggactgta
aaaaaggaagtatcacctggagttatgcttgatatagaagaattttttgtaaagtacaaa
aattactcttatctccactgtgagtgggccacggaacagcagcttttgaaagataaaagg
atccagcagaaaatcaagcgattcaagctgagacaagcacagagggcacactttttggca
gatatggaagaagaaccctttaaccctgactacgttgaagtagacagaatattggaagtt
tctttttgtgaagataaggatactggtgagtctgttatttactacttggtaaagtggtgc
tcactgccatatgaagatagcacttgggaattaaaagaagatgtagatcttgcaaaaatt
gaagagtttgaacaacttcaagcttcacggcctgacacaagacacttggaccgtcctccc
tctaacatttggaagaaaatagagcaatccagggaatataaaaatggcaatcaactcagg
gaatatcaactagaaggactcaactggctcttgttcaattggtataatagacgaaactgc
attttagcagatgaaatgggtcttggcaaaaccattcagtcgattacattcctctacgaa
atcctgctgacgggtataagaggtcctttcctgattattgcaccgctttctaccattgca
aactgggaaagagaattccgaacatggacggatattaacgttgtcgtttatcatgggagc
ctgattagcagacagatgatacagcaatatgagatgtacttcagggactctcaggggcgc
atcatccgaggagcgtaccggttccaagccatcatcactacctttgaaatgattcttggg
ggctgtggagaacttaatgcaattgactggcgatgtgtgattattgatgaagcacacagg
ttaaaaaataaaaattgtaaactcctggagggtttgaaactcatgaatctggaacacaag
gtgctcttgactggcactcctctccaaaacacagtcgaggaactgttcagccttcttcac
tttcttgaacccttaaggtttccatctgaatcaacattcatgcaagagtttggagacctg
aaaacagaggaacaggtacagaaacttcaggctatccttaaaccaatgatgctgagacga
ttaaaagaagatgtggagaagaaattggcacccaaggaagagactattattgaagtagag
cttaccaacattcaaaagaaatactatagggctattttagagaagaacttctcattttta
tccaaaggagctggacaaacaaacgtacctaacttggtcaataccatgatggagctcagg
aaatgctgcaatcatccgtatcttatcaaaggtgctgaggagaaaatacttggagaattt
agagatacatacaatccatctgcctctgattttcatctgcaagcaatgatccaatctgct
ggtaaactggtcctcattgataagttacttcccaaaatgaaagccggcggccataaagtg
ctgatcttctctcagatggtccgctgccttgacatcctggaagactaccttatccataag
agatatttatatgagcgaattgatggtagagtcagaggaaatcttcgacaagcagccata
gatcgatttagtaaacctgattcagatcgattcgttttcctcctgtgtacccgagctggt
ggtctgggcatcaacctaactgcagcagatacatgcatcatttttgattctgattggaat
cctcaaaatgacctccaggcccaagctcgttgccacagaattggtcagaacaaagcagtt
aaagtctacagattagtaactcgaaactcctatgagagagagatgtttgaccgagccagc
ttgaaactgggcctagataaagccgtgctacagagcatgagtggaagagacagtaatgtc
agcggtattcagcagctttccaaaaaagaaatagaagacctgcttcgaagaggtgcctat
ggagccattatggaggaggaagatgaaggctctaaattctgtgaggaagatattgaccag
attttacttcgtcgtacaaaaactatcacaatcgaatcagaaggacgtgggtcaacattt
gctaaggcaagctttgtagcatctggaaaccggacggatatctccttagatgatcccaac
ttctggcaaaaatgggctaaaaaagcagaactagacatagacaccatcagtggcagaaac
agtttagttattgacaccccaagaattcggaagcaaaccagaccctttagtgccacaaaa
gatgaattggctgaattatctgaagctgaaagtgaaggagaagagaaacccaaactccgg
agaccctgtgaccgatccggtggctatgggaggactgaatgctttagagtggagaaaaac
ctactggtttatgggtggggccgatggcgagagatcctgtctcacgggcgttttaagcgg
cagctgaatgagcatgatgtggaagtcatttgccgggccctcctagcctattgcctcgtt
cactatcggggcgatgaaaaaattaaaggcttcatatgggatctcatcactcccactgaa
gatggccagactcgagagctgcagaatcacttaggcctctccgctcctgtgcccaggggc
cgaaaggggaagaaagtaaagacgcagacaagctcctttgacatccagaaagcagagtgg
ctccggaaatataacccagagcagctcctgcaagacgagggctacaagaaacacgtcaag
caccactgcaacaaagtcctgcttcgtgtaaggatgctgtactatctaaagcaagaagtc
attggaaatgagagtcaaaaagtctttgatggagttgatgcaagtgacattgatgtgtgg
gtgccagagccagaccattccgaggttcctgctgcgtggtgggactttgatgctgataag
tctcttcttattggggtttttaagcacggttatgaaaagtacaacacgatcagagcagac
ccagctttgtgcttcttggaaagagtgggcaagcctgacgacaaggctgtcgctgctgaa
cagagagccaatgactacatggatggggatgtggaagatccagaatacaagcctgcccca
gccatctttaaagatgatattgaggatgacgtttcctcacctggcgacctggtcatagct
gatggagagggtcaattgatggaaggggataaagtgtattggcctaccccgtcagctctg
accacacggctaagacgtctcatcactgcatatcagcgaactaataaaaacagacacatc
cagcaaatacaacccacgttctcagtgcctgccaatgccatgcagcctctttacgaagaa
gctgccctgaaccctaaaatggcagctaagattgaaagacagcagagatggacaaggaga
gaagaagctgacttttatcgagttgtgtctacatttggagtcgtttttgacccagacaga
gggcagtttgattggacaaaattcagagctctggctaggctacacaagaaaactgataac
agcttggagaagtatttgtgtgcgttcatgtccatgtgccggagggtttgtcgtcttcct
tccaaagaagaattggtcgatccaaatatttttattcaaccaatcacagaagaacgtgct
tctaggactttatatcgcattgaacttctaagaaaagtacgggagcaggctcttcgtcac
ccacagttgtttgaacgcttgaagctttgccatccaaatccagacttacctatctggtgg
gagtgtggctctcatgatagggatttgctcattggtgctgccaaacatggagtcagccgg
accgactaccacattctgcgtgatcctgaactctcgtttatggcagctcagaggaactac
aatcagagtaaggcggctcactcaaggactgctaccccacttttacagcaataccaagta
gcactttctgcttctcctcttacctctttgcctagactgctaggtgctaaagggactctt
ctagaggatatgaaagttaagagtgaaagcctcacagaagagccccagtcctctgaagaa
gaatctatgtcttctatggaaacaaggacacgagttaaatctgagcctgtaagtccaaag
aatggtgttttatcacaggctactggagaccagaaatctggtgggaaaagtgaaacagac
agacgcatggttgcagccagaacagaacccctaactccaaacccagcttctaagaaacag
agagtccacaaaagaggatcagagtccagttctgattctgactctgattctgagcgctca
tcgtgttcttccagatcctcctcctcctcttcctcctcctcttgttcacactctcgatca
ggctctagctcttcttcatcctcatcttgttcttcggcatcttcctcctcctcctcatct
tcctcctcctcctcctcatcttcttcatcatcatcagaagaaagtgacagtgaagaagat
gtccagaagcgagaaggcacgccgcacgggaaagcctatgatgaggagagcgtcgcatca
ctgagcacgacccaagatgaaactcaggacagtttccaggcaaacaatggcacgccagag
cctgcctgcctgctacaaggtggatatacgctggcagcctcatattggccaaaggaccgg
gtaatgatcaaccgcctggacagtatttgtcagacagttctgaaagggaagtggccgtca
gctagaagacattatgatgctaacacggtggcgtccttctataccacaaaactgctggat
agccccggagcagctacagaacacagcgagcccagcgtccccacacccccagccgttgct
gtcaaagaagagcatgaacagtcagcacagatgtcaaaggtgaagaagcatgtacgagaa
aaggagtttacagtgaaaatcaaagacgaaggtggcttgaagttgacatttcagaagcag
gggcttgcccagaaaagaccatttgatggtgaagatggcaccctgggtcagcagcagtac
ctcactcgccttcgggagctccagagcacatcggagactagccttgttaacctccccaaa
tctgtgccagcatcaggtacttccattcagtcaaccctcggtgccaacggagtgatacta
gacagccagcctatagtgaagaaaaggcggggaaggagaaggaacgtagaaggtgctgac
atcctctttttgaacagaaataagccacccaatcatattcccaccgggatgaacccagca
ctgtcctatcctcagcctcaaagaattcctgacacagagagtcctgttccagttattaac
ctcaaagacgggacaaggctcgcaggagatgatgcgccgaagagaaaggacctggacaga
tggcttaaggagcaccccggttatgtggaggacctcggagcctttatcccaagagtgcag
ctgcacgagggaagacccaaacagaaaaggcatcgatgccgaaacccaaacaaactcgat
gtcaacagtctcactggggaagagcgggtgcagctgattaacagaaggaatgcgagaaag
gttggaggcgcatttgctcctcctttgaaagacttatgtagattcctgaaagaaaattca
gaatatggagtggctcctgaatggggagatgttgttaagcagtctgggtttcttccagaa
agtatgtttgaacgcattctcactggtccagttgtgagagaggaagtaagcaggcggggg
agaaggcctaaaagtggaattgccaaggctaccgcagcagcagcagcagcagcagctcct
gccggcagtgtgccaggcaaccctttgctggccaatggattgcttccaggcatggatctc
acagctcttcaggccttacaacaaaatctgcagaacctgcagtcactgcaagtgactgca
gggctgatgggcatgcctgctggcctctctcctggaggagaaactaaaaacatggctgct
atgttccccatgctgttctcaggaatggccgggttaccaaatctgctaggcatgggagga
ctcctgtcaaagactgcagagtctggggcggaagaaaagcgaggaaatgactcgaaggag
ctagaaggaaaaaaagaaaggacagagagccaaagttcagagaatggaggagaacgctgt
gtgccaggttctccttcgacttcctccacggctgcattgaattcagctgcagctgccaag
cccatagctcttaacccactgttgctgtctaacatactttacccagggatgctgctcact
ccaggccttaatcttcatcttccaaccttgtctcagtccaatacttttgatgtacagaaa
aacaaaagtagtgacttagactcatctaagtcaatcgaaataaaggaagaagattccaga
gttagagatcaggaagagaaagggggaactgagcctagtcctctcaacgagaacagcaca
gacgagggttcagagagagcgtcttccgggtctgacagctcctcctcctcctcctccgag
gattcagactcaagcaatgaagactga
DBGET
integrated database retrieval system
