Mus caroli (Ryukyu mouse): 110311440
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Entry
110311440 CDS
T05910
Symbol
Vps8
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog isoform X2
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
mcal
Mus caroli (Ryukyu mouse)
Pathway
mcal04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
110311440 (Vps8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
mcal04131
]
110311440 (Vps8)
Membrane trafficking [BR:
mcal04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
110311440 (Vps8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps8
Clathrin
zf-RING_11
zf-RING_2
zf-RING_UBOX
zf-C3H2C3
zf-RING_5
zf-C3HC4
PHD
Motif
Other DBs
NCBI-GeneID:
110311440
NCBI-ProteinID:
XP_021040414
Ensembl:
MGP_CAROLIEiJ_G0020594
UniProt:
A0A6P5RC68
LinkDB
All DBs
Position
16:18654634..18867173
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AA seq
1427 aa
AA seq
DB search
MESEPDQEHLEQNLCARAVEEELNKSFNLEASLSKFSCIDLDKELEFRNDLIDDKEFDIP
QVDTPPTLESILNETDDEDESFILEDPTLLNVDTIDSHSYDTSSVASSDSGDRANLKRKK
KLPDSFSLHGSVMRHSLLKGISAQIVSAADKVDAGLPTAIAVSSLIAVGTSHGLALIFDQ
NQALRLCLGSTSVGGQYGAISALSINNDCSRLLCGFAKGQITMWDLASGKLLRSITDAHP
PGTAILHIKFTDDPTLAICNDSGGSVFELTFKRVMGVRTCESRCLFSGSKGEVCCIEPLH
SKPELKDHPITQFSLLAMASLTKILVIGLKPSLKVWMTFPYGRMDPSSVPLLAWHFVAVN
NSVNPMLAFCRGDMVHFLLVKRDESGAIHVTKQKHLHLYYDLINFTWINSRTVVLLDSVE
KLHVIDRQTQEELETMEISEVQLVYNSSHFKSLATGGNVSQALALVGEKACYQSISSYGG
QIFYLGTKSVYVMMLRSWRERMDHLLKQDCLTEALALAWSFHEGKAKAVVGLSGDVSKRK
AVVADRMVEILFHYADRALKKCPDQGKIQVMEQHFQDTVPVIVDYCLLLQRKDLLFGQMY
DKLSENSVAKGVFLECLEPYILSDKLVGITPQVMKDLIVHFQDKKLLENVEALIVHMDIT
SLDIQQVVLMCWENRLYDAMVYVYNRGMNEFISPMEKLFKVIAPPLNAGKTLTDEQVVMG
NKLLVYISCCLAGRAYPLGDIPEDLVPLVKNQVFEFLIRLHSVEASSEEEVYPYVRTLLH
FDTREFLNVLALTFEDFKNDKQAVEYQQRIVDILLKVMVENSDFTPSQVGCLFTFLARQL
AKPDNTLFVNRTLFDQVLEFLCSPDDDSRHSERQQVLLELLQAGGIVQFEESRLIRMAEK
AEFYQICEFMYEREHQYDKIIDCYLHDPLREEEVFNYIHNILSIPGHSAEEKQSVWQKAM
NHMEELVSLKPCKAAELVATHFSEQIEVVIAQLQNQLLLFKFLRSLLDPREGVHVNQELL
QIPPHITEQFIELLCQFSPDQVIQTLQVLECYRLEETIQITQKYQLHEVTAYLLEKKGDA
HGAFLLLLERLQSRLQEMTQQGENTRDDILLKGVEDTMVETIALCQRNSQNLNQQQREAL
WFPLLEAMMTPQKLSSSAAPPHPHCEALKSLTMQVLNSMAAFIALPSILQRILQDPIYGK
GKLGEIQGLILGMLDTFNYEQTLLETTASLLNQDLHWSLCNLRASVSRGLNPKQDYCSIC
LQQYKRRQEMADEIIVFSCGHLYHSFCLQSKECTLEVEGQTRWACYKCSSSNKAGKLSEN
PSEDKKGRITSSQVKMSPSYHQSKGDPPARKANSEPVLDPQQMQAFDQLCRLYRGSSRLA
LLTELSQNRGGDSCRPFAGPQSGPAFNSVFQKENFQLQLAPPPVAEE
NT seq
4284 nt
NT seq
+upstream
nt +downstream
nt
atggaaagtgaaccagaccaggagcatttggaacagaacctgtgcgccagggctgtggaa
gaagagttgaacaagtcttttaatttagaagcttccctttcaaaattctcttgcatagat
ctggataaggagctggagttcagaaatgatctgatcgatgacaaggagtttgatattcct
caggtggacacccctccaactctggaaagcattcttaatgagacggacgatgaagatgag
tctttcattctggaggaccctaccttgttaaacgtcgacaccatcgactctcactcttac
gatacctcatctgtggcgagctcagacagcggcgacagggccaacctaaagaggaagaag
aagttaccggactctttctcgctgcatgggtcggttatgcgacattcacttctaaagggg
atatctgcacagatcgtgtccgcagccgacaaagtagatgctggcttgcctacagcaatt
gccgtgtccagtctcatagcggtgggaacgtctcacggactggctttaatatttgatcag
aatcaagctctgcggctctgcctgggtagcaccagtgttggggggcagtatggagccatc
tctgccctcagcatcaacaatgactgctcaagacttctttgtggctttgctaaaggacag
atcaccatgtgggatttggccagtggaaaacttctcagatcaataacagatgctcatcct
ccagggactgcaatcttgcacatcaagttcacagatgacccaactcttgcgatttgcaac
gacagcggaggctctgtttttgaactaacatttaagagagtgatgggcgtgcgaacgtgt
gagtctcggtgcctgttcagcggctccaagggtgaggtctgctgcatcgagcccctgcac
tcaaagcctgagctgaaagaccatcccatcacgcagttctcactgctggccatggcgtcc
ttaacaaagatattggtcattgggttgaaaccatccctgaaagtgtggatgactttcccc
tatggacggatggatccttccagtgttccgctgctggcctggcacttcgtggcagtgaat
aactctgtgaatcccatgctcgccttctgcagaggcgatatggttcactttctcctggtt
aagagagatgagtcgggcgcaatacacgtcaccaagcagaagcaccttcacctgtactac
gacctgatcaacttcacttggatcaactcgcgcacagtcgtgcttttagacagcgtggag
aagctgcatgtgattgatcggcagacacaggaggaactggagacaatggagatctcagaa
gtccagctggtctacaacagcagccactttaagtcattggccacgggaggaaacgttagc
caggccctggctttggttggagagaaggcttgctaccaatccatcagtagctatggagga
cagatcttctatctggggaccaagtctgtgtacgtgatgatgctgagaagctggagggag
aggatggaccatctcctgaagcaggattgccttacggaagccttggccctcgcgtggtct
tttcatgaaggaaaggcaaaagcagtagtggggctatcgggggatgtcagcaagaggaag
gctgttgttgctgatcggatggtagagatcctgttccattatgcagatcgggctctgaaa
aagtgcccggaccagggaaaaatccaagtgatggagcaacactttcaggatacggtgcca
gtcatagtggactactgccttctgctccagcgaaaggatcttctatttggtcaaatgtac
gacaaattaagcgaaaattccgtcgcaaaaggcgtgtttttggagtgccttgaaccatat
atcttaagtgataaactggtggggattactccccaggtcatgaaggacttaattgttcat
ttccaagataaaaaactgctggagaatgtggaagccctcattgtccacatggacatcacc
agtctcgacattcagcaggtggtcctcatgtgttgggagaatcgtctgtatgacgccatg
gtctatgtctacaaccgaggcatgaatgagtttattagtcccatggagaagcttttcaaa
gtcatcgccccacctctgaatgcagggaagactcttacagatgagcaagttgttatgggc
aacaagcttctggtgtacatcagctgttgcctggcaggtcgtgcctaccctcttggtgac
attcctgaagaccttgttcccttggttaaaaaccaggtttttgagtttctgattcgcctg
cattctgtagaagcatcctctgaggaagaagtctatccttatgttcggactttgctacat
tttgacacaagagaatttctgaatgtgttggcactgacctttgaagactttaaaaatgat
aagcaagctgtggaataccagcagcgcattgtggatattttattgaaggttatggtggag
aattcagattttaccccgtcacaagtggggtgtctttttacattcctcgctcgtcagctt
gcaaagcctgacaataccttgtttgtgaacaggaccctctttgatcaagtcctcgagttc
ctctgtagccctgacgatgactcccgccactctgaaaggcagcaggtccttttagaattg
ctgcaggccggaggcatagttcagtttgaagagagtcggctcatccgcatggcagaaaag
gcagaattctatcaaatctgtgaatttatgtatgagcgagaacaccagtatgacaagatc
attgactgctacctgcacgacccgttgagagaggaagaagtcttcaattatatccacaac
atcttatctattcctggtcacagtgctgaggagaagcagtctgtgtggcagaaagcaatg
aatcatatggaggaacttgtgtccctgaagccctgcaaagccgcagagctggtggctact
cacttttctgagcagatcgaagtggtcattgcacagcttcagaaccagcttttgcttttc
aaatttttgaggagtcttcttgatccaagggaaggtgttcatgtcaatcaggagttgctg
cagatcccgcctcacattacagagcagttcattgagctgctgtgccagttcagtcctgac
caagtcatacagacactgcaggtccttgagtgctaccggctggaggaaacgattcagatt
acacaaaagtatcagctccatgaagtcactgcatatctgctggagaagaaaggggatgcg
cacggcgccttcctgctgctgctggagagactgcagagcaggctgcaagagatgacacag
cagggcgaaaataccagggacgacatcctgctgaaaggtgttgaagataccatggtagag
acaattgctctttgccagagaaattcacagaatttgaatcagcagcagcgagaggctcta
tggtttccactgttggaggcaatgatgacaccacagaagctgtccagctcggctgctcct
cctcatccgcactgtgaagctctgaagtctttgaccatgcaagtcctaaacagcatggca
gcgttcatcgccctcccgtccatcctacagagaatcttgcaggacccaatttatggaaaa
ggaaagcttggagaaatccagggccttattctggggatgctggacaccttcaactatgag
caaaccttgctagaaacaacagccagcctcctgaaccaagatctccattggtcactgtgt
aacctgagagcatcagtatccagaggactcaatcccaaacaggattactgttctatatgt
ttacagcagtacaaaagacgccaagaaatggctgatgaaattattgtctttagctgtggc
catttgtatcattcattctgtctccaaagtaaggaatgcaccctggaggttgagggtcag
acgagatgggcatgttacaaatgcagctcaagtaataaagcgggcaaactcagtgaaaat
ccttctgaagacaagaaaggacggataacctcgtctcaggtaaaaatgtctccctcgtat
catcagtccaaaggggatcctcccgccaggaaggcaaactcagaacctgttctggaccca
cagcaaatgcaagcctttgatcagctctgccggctctacagaggaagttctaggctggct
ctccttacggagctctcccagaaccgaggtggcgacagctgcagaccgtttgctggcccc
cagagcgggcctgctttcaacagcgtcttccagaaggagaacttccagctgcagctcgca
cctccgcctgtggctgaagaatga
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integrated database retrieval system
