Mycolicibacterium chubuense: Mycch_4291
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Entry
Mycch_4291 CDS
T02150
Name
(GenBank) DNA ligase D/DNA polymerase LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mcb
Mycolicibacterium chubuense
Pathway
mcb03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mcb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Mycch_4291
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mcb03400
]
Mycch_4291
Enzymes [BR:
mcb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Mycch_4291
DNA repair and recombination proteins [BR:
mcb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Mycch_4291
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AFM19005
UniProt:
I4BNZ8
LinkDB
All DBs
Position
complement(4500799..4503045)
Genome browser
AA seq
748 aa
AA seq
DB search
MKLTNADKVLYPATGTTKGDVFEYYVRVAEAMLPHIAGRPVTRKRWPNGVEEGSFFEKQL
ASSAPEWLDRGTIVHKSGTTTYPVIDTAEGLAWIAQQASLEVHVPQWRFDDTGSVGPATR
IVFDLDPGEGVSMRQLCEVAHEVRDLITDIGLQTFPLTSGSKGLHLYVPLQDPISSRGAS
VLAKRVAQQLEQTMPKRVTATMTRSLRDGKVFLDWSQNNGNKTTIAPYSLRGREHPTVAA
PRTWEEIEDPKLRHLTYDEVLDRLERDGDLLAELDDPLPVPDRLTTYRSMRDTARTPEPV
PKQSPEVGNNDKFVIQEHHARRLHYDFRLERDGVLVSWAVPKNLPETPSVNHLAVHTEDH
PMEYLTFAGEIPKGEYGGGQVYVWDTGTYETEKFRDNPPDGPAKGGEVIVTLHGEKVEGR
YALIQTDGKNWLAHRMKDQKHPTFADLVPMLTTEGSVERLSKGQWAFEGKWDGYRILVEA
DHGKLTVRSRRGRDVTAEYPQFQAIAADLADHHVILDGEAVALDESGVPSFREMQNRARS
TRVEFWAFDILYLDGRSLMRAKYTDRRRVLETLAEGGGLIVPAAIEGDGPQALAYAEKKR
WEGVVAKKKDSTYQAGRRSSSWIKDKLWNTQEVVIGGWRQGNGGRTSGIGALMLGIPGEG
GLQFVGRVGTGFTEKELASLKETLTPLRSDESPFSARLPTQDAKGVTFVRPELVGEVRYS
ERTGDGRLRQPSWRGLRPDKGPGEVRWE
NT seq
2247 nt
NT seq
+upstream
nt +downstream
nt
gtgaagctgaccaacgcggacaaggtgctctacccggccacgggtaccaccaagggtgac
gtgttcgagtattacgtgcgcgtcgccgaggcgatgctgcctcacatcgccggccggccc
gtgacgcgcaagcgctggcccaacggcgtcgaggaaggatcgttcttcgagaagcaactg
gcctcgtcggccccggagtggctggaccggggcaccatcgtccacaagtcgggcaccacc
acctacccggtcatcgacacggccgaaggactggcctggatcgcgcagcaggcgtcgctg
gaagtgcatgtgccacagtggcgattcgacgacaccggttcggtgggcccggccacgcgc
atcgtgttcgacctcgatccaggcgagggggtgtcgatgcgtcagctctgcgaggtcgcc
cacgaggtgcgggacctgataaccgacatcggactgcagaccttcccgctgaccagtggc
agcaaggggctgcacctctatgtcccgctgcaggatccgatcagctcgcgcggcgcttcc
gtgctggccaagcgggtcgcccagcagctcgagcagacgatgcccaagcgcgtcacggcg
acgatgacccggagtctgcgcgacggcaaggtgttcctggactggagtcagaacaacggc
aacaagacgacgatcgcgccgtattcgcttcgcggacgcgagcatccgaccgtggcagca
ccgagaacgtgggaggagatcgaggatccgaagctgcgtcacctgacctacgacgaggtg
ctcgaccgactcgagcgagacggcgacctgctcgccgaactcgacgacccgctacccgtc
cccgaccggctgacgacataccggagcatgcgcgacaccgctcgtactccggagccggtc
ccgaagcagtcgccggaggtcggcaacaacgacaagttcgtcatccaggagcaccatgcc
cggcgtctgcactacgacttccggctggagcgcgacggcgtcctggtcagctgggcggtg
ccgaagaaccttccggagacaccgtcggtcaaccacctcgccgtgcacaccgaagaccat
ccgatggagtatctgacgttcgccggcgagatcccgaagggggaatacggcggcggacag
gtctacgtctgggacaccggaacctatgagaccgagaagttcagggacaacccgcccgac
ggtccggccaaaggcggcgaggtcatcgtcacgctgcacggcgagaaggtcgaaggccgc
tatgcgttgatccagaccgatggcaagaactggcttgcgcaccggatgaaagatcagaag
cacccgacgttcgccgatctggtgccgatgctgaccaccgaaggctcggtcgagcgactg
tccaaggggcagtgggcttttgaaggaaagtgggacgggtaccggatactcgtcgaggcc
gaccacggcaagctgacggtgcggtcccggcgaggtcgcgacgtgaccgccgagtacccg
cagttccaggcgatcgccgcggatctcgccgatcaccacgtgatcctcgacggggaggct
gtcgcgctcgacgagtcgggtgtgccgagctttcgcgagatgcagaaccgtgcgcgctcc
acccgcgtggagttctgggcgttcgacatcctctacctggacgggcgctccctgatgcgc
gccaagtacaccgaccgcaggcgcgtgctcgaaaccctggccgagggcggtggtctcatc
gtgcccgcagcgatcgagggggacggtccgcaggctctggcgtatgcggagaagaagcgg
tgggaaggcgtcgtcgccaagaagaaggactccacctatcaggccggccggcgttcgtcg
tcgtggatcaaggacaagctgtggaacacgcaggaagtcgtgatcggcggctggcgccag
ggcaacggcggacgcacgagtggaatcggtgcgctgatgctcgggatccccggcgagggc
ggtctgcagttcgtcggacgcgtcggcaccggcttcaccgagaaggagctcgcgtctctg
aaggagacgctcacgccgctgcgcagtgacgaatcgcccttcagtgcacggcttcccact
caagacgcgaagggggtcacgttcgtgcggccggagttggtgggggaggtgcgctacagc
gagcgcaccggcgatggccggctgcggcaaccgagttggcggggactgcggccggacaag
gggcccggcgaagtcaggtgggagtga
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