Methyloceanibacter caenitepidi: GL4_0154
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Entry
GL4_0154 CDS
T03636
Name
(GenBank) ATP-dependent DNA ligase clustered with Ku protein, LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mcg
Methyloceanibacter caenitepidi
Pathway
mcg03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mcg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
GL4_0154
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mcg03400
]
GL4_0154
Enzymes [BR:
mcg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
GL4_0154
DNA repair and recombination proteins [BR:
mcg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
GL4_0154
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
DNA_ligase_C
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
BAQ15624
UniProt:
A0A0A8K0U2
LinkDB
All DBs
Position
complement(158061..160607)
Genome browser
AA seq
848 aa
AA seq
DB search
MASRTATLDDYNAKRNFKATPEPKGSVAKPGGNVYVVQKHDARRLHYDLRLELDGVLKSW
AVTKGPSLDPADKRLAVRTEDHPVDYGTFEGVIPEGYGAGTVMLWDRGTWEPKGDPHEGL
EEGILKFELHGKRLKGGFALVRMKKRKGEKRENWLLVKERDQDADESRDPRKIWTKSVAT
DRGMAAIAEGGTDEGKRAPKAKKSTAKQSGSSAKKKSGLASVSFTPPQLAKLADQPPKGD
AWLHELKYDGYRIQALIKGDEVRLITRNGKDWTDKYPAIADALRTLKVGSAAIDGELVAL
DDAGVSRFGLLQNAADDPSVHLRYYAFDLLSLNGKDLKSEPLLERKEQLEAILKGASKLI
HYSDHIEGSGQAVIEKACALNLEGVVSKKATAPYRSGRGTSWIKSKCIGNDEFVIGGYRK
SERRGRPFASLLLGEYEKDKLVYRGRVGTGFNAKTLDMLHRKMEPLQRKTSPFEKLPADA
RRGAVWVTPKLVAQVSYTERTQDGHLRHPSFLALREDKAAKDVTAVPDEDTSNQDSPDDV
SRDKDNNNDDPVEVLGVKLTHPGRVMFPEQGATKREIAEYYVAFKDHVLTYLKDRPLSIV
RCPSGRGGKCFFQKHYKTSLPDHFRAVSIEQKDGKTSSYLLIDSPEGLVGAAQIGALELH
IWGARADDIERPDRLVFDLDPDDAVPFAAVRDAARELRDVLKAAGLQSFALLTGGKGIHV
ICPLERRREWPDIKTFARGFALKLAEAAPGTYVAQASKEKRKGKIFIDWMRNQRGATAIA
PYSLRARPGAPIATPVSWRELPRIEGAADYTLGNIRSRLAHLKSDPWKGYGAVRQSITNA
ALEFVRGE
NT seq
2547 nt
NT seq
+upstream
nt +downstream
nt
atggcttcacgtacggccacgctcgacgactacaacgccaagcgaaacttcaaggcgacg
ccagagccgaaggggtccgtcgcgaagccgggcggcaatgtctatgtcgtgcagaagcac
gacgcgcgccgtctgcactacgatctgcggcttgaactggacggcgtgctcaagagctgg
gcagtaaccaaaggtccaagcctcgatccggccgacaagcgcctcgcggttcgcacggaa
gatcaccccgtcgactacggcacgttcgaaggtgtgatcccggaaggctacggtgccgga
acggtgatgctttgggaccggggcacatgggaacccaagggggacccccatgaaggcctc
gaggaaggcattctcaaattcgagctccacggcaagcgtttgaagggcgggtttgcgctt
gtccgcatgaaaaagcggaagggcgagaaacgggagaactggctcctcgtcaaggaacgc
gatcaagacgccgacgagagccgcgacccgcggaaaatctggaccaaaagcgttgcgacg
gaccgcggtatggctgccatcgcggagggcgggaccgacgagggcaagagggccccgaag
gcgaaaaagtcgacggccaagcaatcaggttcgtccgcaaagaaaaagtccggtctggcc
agcgtgagctttacgccaccgcagctggccaagctcgcggaccagccacccaagggcgac
gcctggctgcatgagctgaaatatgacggctatcgcattcaggcgctcatcaagggtgac
gaggtccgcctcatcacgcggaacggcaaagactggaccgacaaataccccgccatcgcc
gacgcgctgcgcacgctgaaagtcggctcagctgcgatcgacggtgagctcgtggccctc
gacgacgcaggcgtcagccgctttggcttgttgcaaaacgcggcggacgatcccagcgtt
cacctccgttattacgccttcgacttgctttccctcaacggcaaagacctgaagtcggag
ccgctgctggagcgcaaagagcagcttgaagcgatcctgaaaggcgcgagcaagctgatc
cactacagcgatcacatcgaggggtcggggcaggctgttatcgagaaggcttgtgccctc
aatctcgaaggcgtcgtctccaagaaggcaaccgccccttatcgatctggacgcggaacg
tcttggatcaaatccaaatgcattgggaacgacgagttcgtcatcggcggctatcgcaaa
tcagagcggcgcggccgtcccttcgcctcgctgctgcttggggagtacgagaaggacaag
ctggtttatcgcggccgcgtcggcactggattcaacgcgaagacactcgatatgctgcat
cgaaagatggagccgttgcagcgcaagacgagccccttcgagaaactgccggctgatgcc
cgccgcggcgcggtctgggtgacgccgaagctcgtggcacaagtctcgtacactgaacgc
actcaggatggccatctccggcatccgagctttttggctttgcgcgaagacaaagccgcc
aaggacgtgaccgcggtgccggacgaagacacgtcaaaccaagactctccagacgacgtc
agccgggacaaagacaacaacaacgacgatcccgtcgaggttcttggcgtcaagctgacc
caccccggccgtgtgatgtttcccgaacagggggcaaccaagcgggagatcgccgagtat
tatgtcgcgttcaaagatcacgtccttacctatctcaaagaccggccgctgagcatcgtg
cgctgtccgtcggggcgtggcggaaagtgctttttccagaagcactacaagacgtcgctc
cccgatcactttagggccgtcagcatcgagcagaaggatggcaagacgtcctcctatttg
ctgatcgattctcccgaggggctcgtcggcgccgcgcagatcggggctctggaactgcac
atttggggcgcgcgcgccgacgatatcgaaaggccggatcggctcgtgttcgacctggat
ccggacgacgccgtaccgttcgcagccgtgcgcgatgccgcgcgggaactgcgcgatgtt
ttgaaggcagcggggctccagtctttcgccttgctcaccggcggcaagggcatccatgtg
atctgtcccttggagcgccggcgcgaatggcccgacatcaagacatttgcgcgggggttc
gctctgaaactcgccgaggcggcgcccggaacctatgtggcgcaagcctccaaggagaag
cggaaaggaaagatctttatcgactggatgcgcaatcagcgcggcgcgacggcgattgcg
ccctattcgctacgcgcgcgccctggtgcaccaatcgcaaccccggtgtcctggcgcgag
ctgccgcgcatcgagggtgccgccgactatacgctcggcaatatacgctcgcgtctcgcc
cacctgaaatccgacccctggaaaggctacggcgcagtgcgacagtccatcaccaatgcc
gcactcgaatttgtgcgcggggaatga
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