Momordica charantia (bitter melon): 111011425
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Entry
111011425 CDS
T05045
Name
(RefSeq) DNA mismatch repair protein MSH3 isoform X1
KO
K08736
DNA mismatch repair protein MSH3
Organism
mcha
Momordica charantia (bitter melon)
Pathway
mcha03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mcha00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
111011425
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mcha03400
]
111011425
DNA repair and recombination proteins [BR:
mcha03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
111011425
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_II
MutS_IV
Motif
Other DBs
NCBI-GeneID:
111011425
NCBI-ProteinID:
XP_022140856
UniProt:
A0A6J1CHA4
LinkDB
All DBs
Position
Unknown
AA seq
1116 aa
AA seq
DB search
MNFCSAGVMGKQKQQVISRFFAPKPKSPSSSSSSPPSIPAPQPFSPPKISATVTFSPSKR
LLSSALASQSTPPKSSKRPKLSPHTQNPVSPLPNPSLHKRFLQKFLEPTENTLQPSNPNP
KPPPGGDPKYTPLELQVVELKKRHPDVLLMVEVGYRYRFFGEDAEIAAKVLGIYAHLDHN
FMTASIPTFRLNVHVRRLVSAGYKVGVVKQTETAAIKAHGSNKLGPFCRGLSALYTKATL
EAAQNLGGGEEGCGGESNYLFCVVEKGMLVENLDCRIENGVDVKIGMVGIEISTGDVIYE
EYSDNFMRSGLESMLLSLSPAELLVGDPISKLTEKLLLGYAGPASNVRVEHVSRDCFKDG
SALAEVMSLYENISQDNLADHHNPDTGFIEQKTDHLAIKEIMNLPDLALQALALTIRHLK
QFGLERIVSLGSSFRPFSCKVEMSLSGNTLKQLEVLKNNDDGSETGSLLQSMNHTLTIFG
SRLFRQWITHPLCDRDMIIARQEAVSEIAASMASSKVSQNIIELDEADSDVMVIEPELNY
VLSSVLTTLGRTPDIQRGITRIFHRTATPSEFIAVVQAVLFAGKQLQKFNIDEEDDNYSS
ASMIGSKLLRKLILSASSSGLINTGAKLLSTISKEAADQGDLPNLMIINNNDQFPKVGRA
RKEVQSVREKLDSLITLYRKQLGMRKLEFVSVLGTTHLIELASDVKVPSNWVKVNSTKKT
IRYHPPAVLSALDELSLVNEELMVASRDAWDVFLSGFSSYYAEFQAAVQALASIDCLYSL
AILSRNMNYVRPEFVHDDEPGQIFIRSGRHPVLESTLGGNFVPNDTNMNVNGEHCEIVTG
PNMGGKSCYIRQVALIALMAQVGSFVPALSAKLRVLDAIYTRMGASDTIQLGRSTFLEEM
TETSHILQHSTSRSLVIIDELGRGTSTHDGLAIAYAALHNLLKYKKCLLLFVTHYPKVAD
IVKEFPRSVGVYHVSYLTSHQNPTLSPLKSDHQDVTYLYKLVPGVAESSFGFKVAQLAQI
PLSCIERATKMGVCLQALETRRAQRKSKEEQPSQETSGKRLEFFLRDAGESEDAYEEFFL
SLKALICAADDIEQSCQQLNRARSMAMDLLGRKLHS
NT seq
3351 nt
NT seq
+upstream
nt +downstream
nt
atgaatttttgcagtgcaggtgtcatggggaagcagaagcaacaggtgatttctcgattc
tttgcgccaaaacccaagtccccatcctcttcctcttcatcgccgccgtcaattccggct
cctcaaccgttttcacccccaaagatatcggcaacagtcactttctctccttccaaacgc
ctcctctcttctgcactcgcctcccaatcgacaccacccaaatcctcaaaacgcccaaaa
ctctccccccatacccaaaaccctgtttctcccctgcccaatccctcacttcacaaaaga
ttcctccagaagttcctcgaacccaccgaaaatactctacaaccttctaatccaaacccc
aaaccaccgccggggggtgatcccaaatacacccctttggagctacaagttgtggaactg
aaaaagagacaccctgatgttcttttgatggtagaagttggttacaggtacagattcttc
ggggaagatgccgaaatagcggctaaagtgttgggtatttatgcccacttagatcataat
ttcatgactgcgagtataccaacgtttaggttgaatgtacatgtgaggaggctggtgagc
gcagggtataaggtgggtgtagtgaagcaaaccgaaactgctgcaattaaggcgcacgga
tcgaacaaattaggccccttttgcagaggattgtcggcattgtatactaaggcaacactt
gaggcggcccagaatttagggggaggtgaagaggggtgtgggggagagagtaactacttg
ttctgtgtggttgaaaagggtatgttggtggaaaatttggactgtagaatagaaaatggg
gttgatgtgaaaattgggatggttggaattgagatatcaactggggatgttatttatgag
gaatatagtgataactttatgagaagtgggcttgaatcaatgcttttgagcttgtctcct
gctgagttacttgttggggatcccatatcaaagctaacagagaagttattactaggttat
gctggacctgcctcaaatgttcgtgtggagcatgtttcacgagattgcttcaaagatggc
agtgcactagctgaagtgatgtctttatatgaaaacatttcccaagataacttagcagat
catcacaacccggatacaggatttattgaacaaaagactgatcacttggctattaaggaa
ataatgaacttgccagatttagctcttcaagcattggccttgaccattcgtcatttaaag
caatttggtttagaaagaattgtgtcgttggggtcttctttcaggccattctcatgcaaa
gtggaaatgtctctttcaggcaatacacttaaacaacttgaggttctgaagaataatgat
gatggttctgaaactggctccttactacagtccatgaatcatactcttactatattcggt
tcaaggctttttcggcaatggataacacatcctttatgtgatagagacatgataattgct
cgtcaagaggccgtctctgaaattgctgcttctatggcatcttcaaaagtatcacaaaac
atcatagagttagatgaagcagattctgatgtgatggtcattgaaccagaattgaattat
gtactttcttcagtgttaacaactttgggaaggacaccagatattcagcgaggtataaca
agaatctttcaccgaactgcaaccccatcagagttcatcgcagttgttcaagctgtttta
tttgctggaaaacagcttcagaagtttaacatcgatgaagaggatgacaattattccagt
gcaagtatgattggatccaagctcctaagaaagctgattttatctgcctcttcctctggt
ttaattaacactggtgcaaaacttttgtcaacgatcagcaaagaagctgcagatcaaggg
gacctaccaaaccttatgatcattaataataatgaccaatttcccaaggttggtagagct
cgaaaggaggttcaatctgtgagagagaaattggattctctgatcaccttataccgcaag
cagcttggaatgcggaagttggagtttgttagcgttttgggaactacgcatttgattgag
ttggcctcagatgtgaaggtaccttcaaattgggttaaggtcaatagtaccaagaaaacc
ataaggtatcacccacctgcagtgttgagtgcattagacgagctatccctggtgaatgag
gagctcatggtggcatctcgtgatgcttgggatgtctttctaagcgggttcagtagctat
tatgcagagtttcaagctgctgttcaagcgttggcttccatagactgtctgtattcgttg
gcaattctctcaagaaatatgaattatgttcgtccagagtttgtgcatgacgatgaacct
ggtcagatatttatccgttctggacgccatccggttttggagagtacattaggagggaat
tttgtgccgaacgacacaaatatgaatgtgaatggagagcattgtgaaatagttacagga
ccaaacatgggagggaaaagttgctacattcgacaagtggctctcattgctctgatggct
caggttggttccttcgtaccagcattgtctgcaaaactccgcgtccttgatgctatatac
actcgaatgggtgcttctgacactattcaacttggaagaagcaccttcctagaagaaatg
accgaaacttcacacatacttcaacattccacctcacgttccctggttataatcgacgag
cttggtagaggtactagtacccacgacggccttgccattgcttatgccgcgttgcataat
ctgcttaaatacaaaaaatgtttgctcctatttgtcacacactatcccaaagttgctgat
attgtgaaggaatttccacgatctgtgggggtataccatgtctcctaccttacttcacac
caaaatccaactttatcgcccctaaaatctgatcaccaagatgttacttatttgtataaa
ctggttcctggtgttgcggaaagcagtttcggcttcaaggttgcccaacttgcacagata
cctttatcatgcattgaacgggctacaaaaatgggggtctgcttacaagcattagaaacc
agaagagcacaacgaaagtccaaagaagagcagccttcgcaagaaacatcaggcaagagg
ttggaattctttcttcgagatgccggtgagtcagaagatgcgtatgaggaattctttctg
tccttgaaagctttaatatgtgccgctgatgatattgaacaaagttgccaacaattgaac
cgagctagaagcatggccatggacttgttaggaaggaagttgcattcttaa
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