Micromonospora chalcea: PVK74_23530
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Entry
PVK74_23530 CDS
T08919
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mchl
Micromonospora chalcea
Pathway
mchl03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mchl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PVK74_23530 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mchl03400
]
PVK74_23530 (ligD)
Enzymes [BR:
mchl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PVK74_23530 (ligD)
DNA repair and recombination proteins [BR:
mchl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
PVK74_23530 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
WDP98813
LinkDB
All DBs
Position
5238297..5239211
Genome browser
AA seq
304 aa
AA seq
DB search
MPADRLKVEVEGRSLELSNLDKVLFPQAGFTKGEVIDYYTRIAPVLLPHLNDRALTRIRF
PNGVDGGSFFEKNAPAATPGWVRTENLPAPGSTKGRETIDYVVCDELPTLVWLANLAALE
LHTPQWKIGAHPDMMVVDLDPGAPAALKQCCQVALLMRDRLASDGISSFPKTSGKKGMQL
CCPIAGTQDAEIVSDYAKRIAQELEQAHPKLVVSKMAKNLRPGKVFIDWSQNNAAKTTVA
PYSLRAQPVPAVSTPLTWDEVEAGAAGKRPSTRPYTAGEVLKRVEKQGDLLAPLLDGGPE
LPVR
NT seq
915 nt
NT seq
+upstream
nt +downstream
nt
atgccggctgatcggctcaaggtcgaggtcgaggggcgctcgctggagctgtccaacctg
gacaaggtgctcttcccgcaggccggcttcaccaagggcgaggtgatcgactactacacc
cggatcgccccggtgctgctgccgcacctgaacgaccgcgcgctcacccggatccggttt
cccaacggcgtcgacggcggctcgttcttcgagaagaacgcgcccgccgcgacccccggc
tgggtacgcaccgagaacctgcccgcccccggctccacgaaggggcgggaaaccatcgac
tacgtggtctgcgacgagctgcccacgctggtgtggctggccaacctggccgcgttggag
ctgcacactccgcagtggaagatcggcgcgcacccggacatgatggtggtcgacctggat
ccgggcgccccggccgcgctcaagcagtgctgccaggtggcgctgctgatgcgcgaccgg
ctggcttccgacgggatctcctcgttcccgaagacatccgggaagaagggcatgcagctg
tgctgcccgatcgccggtacgcaggacgccgagatcgtctccgactacgccaagcggatc
gcgcaggaactggagcaggcgcacccgaagctggtcgtgtcgaagatggcgaagaacctt
cggcccggcaaggtcttcatcgactggagccagaacaacgcggcgaagacgacagtggcg
ccgtactcgctgcgggcccagccggtgccggccgtgtcgacgccgctgacctgggacgag
gtggaggccggggcggccgggaagcggccgtcgacgcggccgtacaccgccggggaggtg
ctcaagcgggtggagaagcagggcgacctgctggcgccgctgctcgacggcggtcccgag
ctgcccgtgcgctga
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integrated database retrieval system
