Mesorhizobium ciceri biovar biserrulae: Mesci_0783
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Entry
Mesci_0783 CDS
T01401
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mci
Mesorhizobium ciceri biovar biserrulae
Pathway
mci03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mci00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Mesci_0783
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mci03400
]
Mesci_0783
Enzymes [BR:
mci01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Mesci_0783
DNA repair and recombination proteins [BR:
mci03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Mesci_0783
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
ADV09952
UniProt:
E8TFS2
LinkDB
All DBs
Position
828227..830740
Genome browser
AA seq
837 aa
AA seq
DB search
MASLEQYHSKRDFKKTAEPAGKVARTKQGEAGGIFVIHKHAATRLHYDLRLEHDGVLWSW
AVTRGPSLDPHEKRLAVHVEDHPIDYAPFEGTIPKGEYGGGSVIVWDEGTWIPEIDPAKA
MKKGHISFELRGHKLHGAWHLVRLKPRAGEKRDNWLLIKSDDAAARPGEDILKEAPESVK
SGLTIEEVGEGKTAKGEKPKVWHSNKPAAVKTKAGKRLDFIEPQLATLERDAPPGKDWLH
EVKFDGYRMQAQIAGTDVRLLTRTGLDWTKKFGGEIVAELAGLKCSDAILDGEVVVLADS
GVSSFALLQQDLSAKRTNRFIYYVFDLMRLDGRDLRREPLVERKQALQELLGEHSDNAAV
RFSDHFAEPGKIMLEHACRMGLEGVVSKRADAPYRSGRGPTWVKSKCTARQEFVIGGYLP
SDKTGRGLRSILVGFHEGGKLHYAGRVGTGFSGKGANELKAKLDALTAKSSPFSTAVPKG
KGLVWVKPELVGEVEFRSWTSDRIIRHASFQGLREDKPAEEVVQEKPKAATGMPSTGKST
AKPASGGKAAGSMTTTVKLSHPDKLLWPDENISKQGLLDHYAQVWPRMEQFVVNRPLSLV
RAPDGVGGQRFFQKHASAGMSDKIARMKDPTDGEEILFIRDFDGVAALVQYGVVEIHIWG
CTIDEIEKPDQIIFDLDPDEGVDVKAVREAALDIRGKLDELSLPNFVKTSGGKGYHVLVP
LKPAADWDAVKGFAHDFARALEQGAPDRYTATLSKKARTGKIFVDYLRNGRGSTTVAPYS
SRAKKGATVSMPVTWPEIEAGLPPNAFPIGDKTTLKQLAKADPWREFFKQGKTLKRG
NT seq
2514 nt
NT seq
+upstream
nt +downstream
nt
atggccagcctcgaacaatatcactccaagcgcgatttcaagaaaaccgccgaaccggcc
ggcaaggtcgcccggaccaagcagggcgaggccggcggcatcttcgtcatccacaagcat
gccgcgacgcggttgcattacgacttgcggctcgagcatgatggcgtgctgtggagttgg
gcggtgacgcgcggcccgagcctcgacccgcatgagaagcgactggctgtccatgtcgag
gatcacccgatcgactatgcgccgttcgaaggcaccattcccaagggcgaatatggcggc
ggttcggttatcgtttgggacgagggcacctggattcccgagatcgacccggccaaggcg
atgaaaaagggccatatcagcttcgagctcaggggacacaagctgcatggggcatggcat
ctggtgcggctgaagccgcgtgcgggtgaaaagcgcgacaactggctgctgatcaagtcg
gacgatgccgcagcgcgtcccggcgaggacatcctcaaggaagcgcctgaatcggtgaaa
tcgggcctgaccatcgaggaggtcggcgagggcaagaccgcgaagggcgagaagccgaaa
gtctggcattccaacaagccggccgccgtcaagacaaaagccggcaaacgcctcgacttt
atcgagccgcagctggccacgctcgagcgcgatgcgccgccgggcaaggactggctgcat
gaggtgaagttcgacggctatcgcatgcaggcgcagatcgccggcaccgatgtgcggctg
ctgacccgcaccggcctcgactggacgaagaaattcggcggcgagatcgtcgcggagttg
gccgggctgaagtgcagcgacgccatcctcgatggcgaggtggtggtgttggccgacagt
ggtgtttcgtccttcgcgctgctgcagcaagacctgtcggcgaagcggaccaatcgtttc
atctattacgtgttcgacctgatgcgcctcgatggaagggatttgcggcgcgagccgctg
gtcgagcgcaagcaggccttgcaggaactgctcggcgaacactccgacaatgcggcggtc
cgcttcagcgaccatttcgccgaacccggcaagatcatgcttgagcatgcctgccggatg
ggcctggaaggcgtcgtctccaagcgtgccgatgcaccgtaccgcagcggccgcggccca
acctgggtgaagtcgaaatgcacggcgcggcaggagttcgtcattggcggctacctgccg
tcggacaagaccgggcgcggcctgcgctcgatcctggtcggcttccacgagggcggcaag
ctgcattatgccggccgcgtcggcactggtttttcgggcaagggcgccaatgagctgaag
gcaaaactcgatgcgttgacggcaaaatcatcgcccttctccaccgccgtgccgaagggc
aagggcctggtctgggtcaagcctgaacttgtcggcgaagtggagtttcgcagctggacc
tcggaccgtataatacgccacgcctcgttccaggggttgcgcgaggacaagccggcggag
gaagtcgtgcaggaaaagcccaaagcggcgacaggcatgccatcgacaggcaagagcacg
gccaagccggcatcaggcggcaaagccgccgggtcgatgacgaccacggtcaaactctcg
catcccgacaagctgctgtggccggacgaaaacatatccaagcagggcctgctcgaccat
tacgcacaggtttggccgcgcatggaacagttcgtggtcaaccggccgctcagcctggtg
cgggcgccggacggtgtcggcggccagcgtttcttccagaagcatgcctcggctggcatg
agcgacaagatcgcgcgcatgaaggacccgaccgacggcgaggaaatcctgttcatccgg
gatttcgatggtgttgccgcactggtccagtatggcgtggtcgagatccacatctggggg
tgcacgatcgatgagatcgagaagcccgaccagatcatcttcgatctcgatcccgatgaa
ggtgtcgatgtgaaggcggtccgcgaggcggcactcgatatccggggcaagctcgacgag
ctgtcgctgccgaatttcgtcaagacctcgggcggcaagggctatcacgtgctggtgccg
ctgaaaccggcggcggattgggatgcggtgaagggcttcgcccatgactttgcccgcgcg
ttggagcagggtgcccccgaccgctacacggcgacgctgtcgaaaaaagcgcgcacggga
aagatcttcgtcgactatctgcgcaacggcaggggctcgacgacggtcgcgccctattcc
tcgcgcgccaagaagggcgccaccgtgtcgatgccggtgacctggccagagatcgaggcc
ggcttgccgccgaacgctttcccgatcggcgacaagacgacgctgaagcagctggcgaaa
gccgatccgtggagggaatttttcaagcaggggaagacgttgaagcgggggtag
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