Methanothrix soehngenii: MCON_0798
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Entry
MCON_0798 CDS
T01468
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
mcj
Methanothrix soehngenii
Pathway
mcj03030
DNA replication
mcj03410
Base excision repair
mcj03420
Nucleotide excision repair
mcj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mcj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MCON_0798 (ligA)
03410 Base excision repair
MCON_0798 (ligA)
03420 Nucleotide excision repair
MCON_0798 (ligA)
03430 Mismatch repair
MCON_0798 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mcj03032
]
MCON_0798 (ligA)
03400 DNA repair and recombination proteins [BR:
mcj03400
]
MCON_0798 (ligA)
Enzymes [BR:
mcj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MCON_0798 (ligA)
6.5.1.6 DNA ligase (ATP or NAD+)
MCON_0798 (ligA)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
MCON_0798 (ligA)
DNA replication proteins [BR:
mcj03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
MCON_0798 (ligA)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
MCON_0798 (ligA)
DNA repair and recombination proteins [BR:
mcj03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
MCON_0798 (ligA)
NER (nucleotide excision repair)
Other NER factors
MCON_0798 (ligA)
MMR (mismatch excision repair)
Other MMR factors
MCON_0798 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AEB67591
UniProt:
F4BY86
LinkDB
All DBs
Position
complement(705132..706802)
Genome browser
AA seq
556 aa
AA seq
DB search
MSSFLSFAELCQRVEGVSGSLEKVDLVAAFLKNLDDDELAVASGFIMGDLFSPSMDLVMG
VGPSILYEAMARACGCSTERISDMLRATGDPGLVASAAVDKKKPIGFAAFIKDEPLSIKE
VYQRLVAVARASGKGSQDAKVKNLQYLFSQATPLEAQYIARLAIEDMRIGIGEGGVRDAI
AQAFSQDASKVERAYNLTNDIGLVAVNARKGTLADLSVLINHPIKMMLAQVGEGISASMQ
ELGSAAIEWKYDGARVQIHKDGKRVRIFSRRLEDVTRSLPEIVRLAQEVRADKAILDGEV
VAIGKDSRPLAFQEILKRFRRKYNVEKQAKETPLHLFLFDLIYLDGQSTVDLPLTRRREL
LEGIADPSILADQVISDSVQRAEEIYHQALEKGHEGLILKNSMSVYAPGKRGKNWLKIKP
VMETLDLAVIGAKWGEGRRASFLGSYRLACLDEATSKLQDIGWVATGLTDEALAELTELF
RELILVQNGMEVELKPAVIFEVAYEEIQKSQSYSSGYALRFPRLVRVRDDKSLEEADSLE
RVESLYRVQRGRNNSR
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcttcttgagcttcgccgagctctgtcagcgagtggagggggtctccggctct
ctggaaaaggtcgacctagtggcagcattcctgaagaatttggatgatgatgagctggca
gttgcctcagggttcatcatgggggatctcttctcccccagcatggacctggtgatgggg
gtggggccgagcatcctttacgaggcgatggcacgcgcctgtggatgctcgacggagagg
atatcagatatgctgcgcgctaccggggacccgggactggtggcatctgcggccgtcgat
aagaaaaagcccatcggatttgctgccttcatcaaagatgagccgctctccatcaaagag
gtttatcagaggcttgtagccgtggcccgggcctcgggaaagggaagccaggatgccaag
gtcaagaacctgcaatatctcttcagccaggccactcctcttgaagcgcaatatatcgct
cgcctggcaatagaggatatgagaatcggaatcggtgaaggaggagttagagatgccatc
gcccaggctttttcccaggatgcgtcaaaagtggagagggcctacaacctgaccaacgat
atcggcctggtggcagtcaatgcccgcaaagggacgctcgcagatctgagtgtgctgatc
aaccatcccatcaagatgatgctggcccaggtgggagagggaatttccgcctccatgcag
gagctggggtctgcggcgatagagtggaagtacgatggagccagggtgcagatccacaag
gatgggaagagggttcgcatcttctcccgccggctggaggatgtgaccaggtccctgccc
gagatcgtccgtcttgcccaggaggtcagggcggataaggccatcctggatggagaggtg
gtggccattggcaaagactccagacccctggccttccaggagattttgaagcgctttcgc
aggaagtacaatgtggaaaagcaggccaaagaaacgcctctgcacttatttttattcgat
ctgatatatcttgatggccaaagcacagtggatctgcccctgaccagacggcgggaactg
ctggagggtatcgccgatccatcgatactggcagatcaggtcatatccgacagcgtccag
agggcagaagagatctaccaccaggctttggaaaaaggccacgaggggctgatcctcaag
aattcgatgtcggtatacgctccgggaaagaggggcaagaactggcttaagataaaaccg
gttatggaaaccctggacctggcagtgataggggcaaaatggggcgagggcaggagagct
agcttcctgggctcataccggctggcctgcctggatgaggctacgagcaagctccaggat
ataggctgggtagccactggcctaacggacgaggctctggcggagcttactgagctgttc
cgagagctgatcctggtgcagaatgggatggaggtcgagctgaagccggcggtgatcttc
gaggtggcctatgaggagatacaaaagagccagagctactcatcgggatatgcacttcgt
tttcccagattggtgagggtgagggatgacaagtccctggaggaagcggatagcctggag
agagtggaatccctctaccgggtgcagcgaggaaggaataactcccgctga
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