KEGG   Mastomys coucha (southern multimammate mouse): 116089888
Entry
116089888         CDS       T07224                                 
Symbol
Rxra
Name
(RefSeq) retinoic acid receptor RXR-alpha isoform X1
  KO
K08524  retinoid X receptor alpha
Organism
mcoc  Mastomys coucha (southern multimammate mouse)
Pathway
mcoc03320  PPAR signaling pathway
mcoc04148  Efferocytosis
mcoc04151  PI3K-Akt signaling pathway
mcoc04659  Th17 cell differentiation
mcoc04919  Thyroid hormone signaling pathway
mcoc04920  Adipocytokine signaling pathway
mcoc04928  Parathyroid hormone synthesis, secretion and action
mcoc04932  Non-alcoholic fatty liver disease
mcoc04976  Bile secretion
mcoc05160  Hepatitis C
mcoc05200  Pathways in cancer
mcoc05202  Transcriptional misregulation in cancer
mcoc05207  Chemical carcinogenesis - receptor activation
mcoc05216  Thyroid cancer
mcoc05222  Small cell lung cancer
mcoc05223  Non-small cell lung cancer
mcoc05226  Gastric cancer
mcoc05417  Lipid and atherosclerosis
Brite
KEGG Orthology (KO) [BR:mcoc00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04151 PI3K-Akt signaling pathway
    116089888 (Rxra)
 09140 Cellular Processes
  09141 Transport and catabolism
   04148 Efferocytosis
    116089888 (Rxra)
 09150 Organismal Systems
  09151 Immune system
   04659 Th17 cell differentiation
    116089888 (Rxra)
  09152 Endocrine system
   04920 Adipocytokine signaling pathway
    116089888 (Rxra)
   03320 PPAR signaling pathway
    116089888 (Rxra)
   04919 Thyroid hormone signaling pathway
    116089888 (Rxra)
   04928 Parathyroid hormone synthesis, secretion and action
    116089888 (Rxra)
  09154 Digestive system
   04976 Bile secretion
    116089888 (Rxra)
 09160 Human Diseases
  09161 Cancer: overview
   05200 Pathways in cancer
    116089888 (Rxra)
   05202 Transcriptional misregulation in cancer
    116089888 (Rxra)
   05207 Chemical carcinogenesis - receptor activation
    116089888 (Rxra)
  09162 Cancer: specific types
   05226 Gastric cancer
    116089888 (Rxra)
   05216 Thyroid cancer
    116089888 (Rxra)
   05222 Small cell lung cancer
    116089888 (Rxra)
   05223 Non-small cell lung cancer
    116089888 (Rxra)
  09172 Infectious disease: viral
   05160 Hepatitis C
    116089888 (Rxra)
  09166 Cardiovascular disease
   05417 Lipid and atherosclerosis
    116089888 (Rxra)
  09167 Endocrine and metabolic disease
   04932 Non-alcoholic fatty liver disease
    116089888 (Rxra)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:mcoc03000]
    116089888 (Rxra)
  09183 Protein families: signaling and cellular processes
   03310 Nuclear receptors [BR:mcoc03310]
    116089888 (Rxra)
Transcription factors [BR:mcoc03000]
 Eukaryotic type
  Zinc finger
   Cys4 hepatocyte nuclear factor 4-like
    116089888 (Rxra)
Nuclear receptors [BR:mcoc03310]
 2. Hepatocyte nuclear factor 4 like
  2B. Retinoid X receptor (RXR)
   116089888 (Rxra)
SSDB
Motif
Pfam: Hormone_recep Nuc_recep-AF1 zf-C4 tRNA_bind_3
Other DBs
NCBI-GeneID: 116089888
NCBI-ProteinID: XP_031225363
LinkDB
Position
Unknown
AA seq 507 aa
MGTTRWAPGGHCSSRLVGLWFGEGRWPLAVSLPRTESAILPFPDSRPNLDFSTQVNSSSL
NSPTGRGSMAAPSLHPSLGPGIGSPLGSPGQLHSPISTLSSPINGMGPPFSVISSPMGPH
SMSVPTTPTLGFGTGSPQLNSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMASFTKHIC
AICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKC
LAMGMKREAVQEERQRGKDRNENEVESTSSANEDMPVEKILEAELAVEPKTETYVEANMG
LNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSH
RSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVL
FNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEH
LFFFKLIGDTPIDTFLMEMLEAPHQAT
NT seq 1524 nt   +upstreamnt  +downstreamnt
atggggacgacgcgctgggctccgggaggccactgctcttcccggctcgtcgggctgtgg
tttggagaaggccgatggcccctggctgtctctttgcccaggacggagtctgcgatcttg
ccgttccccgacagcagaccaaacctagacttctctacccaggtgaactcttcgtccctc
aactctccaacgggtcgaggctccatggctgccccctcgctgcatccctctctgggtcct
ggaatcggctctccactgggctcccctgggcagctgcactcacctatcagcaccctgagc
tcccccatcaatggcatgggtccacccttctctgtcatcagctcccccatgggcccgcac
tccatgtcggtacccactacacccacattgggcttcgggactggtagcccccagctcaat
tcacccatgaaccccgtgagcagcagtgaggatatcaagcccccactaggcctcaatggt
gtcctcaaggttcctgcccatccctcaggaaatatggcatccttcaccaagcacatctgt
gctatctgtggggaccgctcctcaggcaaacactatggggtatacagttgtgagggctgc
aagggcttcttcaagaggacagtacgcaaagacctgacctacacctgccgagacaacaag
gactgcctgatcgacaagagacagcggaaccggtgtcagtactgccgctaccagaagtgc
ctggccatgggcatgaagcgggaagccgtgcaggaggagcggcagcggggcaaggaccgg
aatgagaacgaggtggagtccaccagcagtgccaacgaggacatgcctgtagagaagatt
ctggaagctgagctcgctgttgagcccaagactgagacatacgtggaggcaaacatggga
ctgaatcccagctcaccaaatgaccctgttaccaacatctgtcaagcagccgacaagcag
ctcttcactcttgtggagtgggccaagaggatcccacacttttcggagctgcccctggac
gaccaggtcatcctactacgggcaggctggaacgagctgctgatcgcctccttctcccac
cgctccatagctgtgaaagatggtatcctccttgccactggcctgcacgtacaccggaac
agcgctcacagtgctggggtgggcgccatctttgacagggtgctgacagagctggtgtct
aagatgcgtgacatgcagatggacaagacggagctgggctgcctgcgagccattgtcctg
tttaaccctgactctaaggggctctccaaccctgctgaggtggaggcgctgagggagaag
gtgtatgcatcactagaagcatactgcaaacacaagtaccctgagcaaccgggcaggttt
gccaagctgctgctccgcctgcctgcactgcgttccatcgggctcaagtgcctggagcac
ctgttcttcttcaagctcatcggggacacgcccatcgacaccttcctcatggagatgctg
gaggccccacatcaagccacctag

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