Methylorubrum extorquens DM4: METDI3716
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Entry
METDI3716 CDS
T00947
Symbol
ddlB
Name
(GenBank) D-alanine--D-alanine ligase
KO
K01921
D-alanine-D-alanine ligase [EC:
6.3.2.4
]
Organism
mdi
Methylorubrum extorquens DM4
Pathway
mdi00470
D-Amino acid metabolism
mdi00550
Peptidoglycan biosynthesis
mdi01100
Metabolic pathways
mdi01502
Vancomycin resistance
Brite
KEGG Orthology (KO) [BR:
mdi00001
]
09100 Metabolism
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
METDI3716 (ddlB)
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
METDI3716 (ddlB)
09160 Human Diseases
09175 Drug resistance: antimicrobial
01502 Vancomycin resistance
METDI3716 (ddlB)
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
mdi01011
]
METDI3716 (ddlB)
Enzymes [BR:
mdi01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.4 D-alanine---D-alanine ligase
METDI3716 (ddlB)
Peptidoglycan biosynthesis and degradation proteins [BR:
mdi01011
]
Precursor biosynthesis
Amino acid ligase
METDI3716 (ddlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Dala_Dala_lig_C
Dala_Dala_lig_N
ATP-grasp_3
ATP-grasp_4
ATPgrasp_ST
GARS_A
Motif
Other DBs
NCBI-ProteinID:
CAX25355
UniProt:
C7CA03
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All DBs
Position
3655414..3656337
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AA seq
307 aa
AA seq
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MSKHVAVLMGGWSSEREISLRSGNACAEALEGEGYRVTRVDVGPDIATVLTELKPDAALN
ALHGPAGEDGTIQGLLEILKIPYTHSGVLASALAMHKERAKTVMRAAGVSVPEGRVVNRH
DAAKSHPLTPPYVVKPIAEGSSMGVIIVRDERSHPPQILASDEWVYGEEVLAETYVAGRE
LTCAVLGDRALGVTEIKPVSGEWYDFDAKYAGGGSIHVLPADLKLNIYQRVQELALTAHQ
ALGCRGVSRADLRYDDTPGGTGALVVLEVNTQPGMTQTSLVPEIAAHAGQSFGELVRWMV
EDASLNR
NT seq
924 nt
NT seq
+upstream
nt +downstream
nt
atgtccaagcacgtcgccgtcctgatgggcggctggtcttctgagcgggaaatctcgctt
cgctccggcaatgcctgcgccgaggcgctggaaggggaggggtatcgcgtcacccgcgtc
gatgtcgggcccgacattgcgacggtgctgaccgagctcaagcccgacgcggcgctcaac
gcgctccacggcccggccggcgaggacggcacgatccagggcctcttggagatcctgaag
atcccctacacccattccggcgtgctggcctcggcgctcgccatgcacaaggaacgtgcc
aaaacggtcatgcgcgcggcaggtgtgagcgttccggagggccgggtcgttaaccgtcat
gatgcggcgaagtcacacccgttaacccctccctatgtcgtgaagccgatcgctgaaggc
tcctccatgggggtcatcatcgtgcgtgacgagcgctcgcacccgccccagattctcgcc
tccgacgagtgggtctacggcgaggaagtccttgcagagacttacgttgccggccgcgag
ctgacctgcgcggtgctgggcgaccgggccctcggtgtgaccgagatcaagcccgtttcg
ggggagtggtacgacttcgatgcgaagtacgccggaggggggtcgatccacgtcctcccc
gcggatcttaaactaaatatttaccagcgtgtccaagagttggcgttaacggcgcatcaa
gcactgggatgtcgtggcgtcagccgtgccgaccttcgttacgacgacacgccgggtgga
accggcgctctcgtcgtcctcgaggtcaacacgcagccagggatgacccagacgagcctt
gtgccggagatcgcggcccacgcaggccagagtttcggtgaactcgtccgatggatggtg
gaggacgcttctctcaaccgctga
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