Malus domestica (apple): 103427237
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Entry
103427237 CDS
T03194
Name
(RefSeq) LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 41 homolog
KO
K20184
vacuolar protein sorting-associated protein 41
Organism
mdm
Malus domestica (apple)
Pathway
mdm04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
mdm00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
103427237
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
mdm04131
]
103427237
Membrane trafficking [BR:
mdm04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
103427237
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
WD40
zf-RING_2
ANAPC4_WD40
zf-HC5HC2H
Motif
Other DBs
NCBI-GeneID:
103427237
NCBI-ProteinID:
XP_028955690
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All DBs
Position
3:12702966..12717460
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AA seq
958 aa
AA seq
DB search
MAPIPPDNGVEGDDEREEEGEEEEEEEEEERXEEEEEEPRLKYQRMGGSIPTLLASDVAS
CIAVAERMIALGTHGGTVHILDFLGNQVKEFPAHTAAVNDLSFDIEGEFIGSCSDDGSVV
INSLFTDEKMKFEYHRPMKAIALDPDYARRSSRRFVAGGLAGHLYFNTKRWLGFKDQVLH
SGEGPIHAVKWRTSLIAWANDAGVKVYDTANDQRITFIERPRGSPRPELLLPHLFWQDDS
LLVIGWGTSIKITSIKTNQSRATNGTYKHVPMSGMNQVDIVASFQTSYFISGIAPFGDTL
VILAYIPGEEDGEKEFSSSVPSRQQGNAQRPEVRIVTWNNDELSTDALPVHGFEHYKAKD
YSLAHAPFSGSSYAGGRWAEGDEPLYYIVSPRDVVIAKPRDAEDHIAWLLQHGWHEKALA
AVEAGQGRSELLDEVGSRYLDHMIVERKYAEAASVCPKLLRGSASAWERWVFHFAHLRQL
PVLVPYIPTENPRLRDTAYEVALVALATNPSFHKELLSTVKSWPPVIYSSLPVISAIEPQ
LNTSSMTDALKEALAVLYEIDGQYEKAFALYADLLKPDIFSFIEKHNLYDSIREKVVQLM
MLDCKLAVPLLIQNKDLITPSEVVKQLLNAIDKCDSRYFLHAYLHPLFEADPHSGKEYHD
MQVELYAEYDPKMLLPFLRSSQHYTLEKAYEICIGRDLLREQVFILGRMGNAKQALAVII
NKLGDIEEAVEFVNMQHDDELWEELIQQCLDKPEMVGVLLEHTVGNLDPLYIVNMVPNGL
EIPRLRDRLVKIVTNYRTETSLRHGCNDILKADIVNLLVKYYKEATHGIYLSNEEDEARS
KRNDSRASQVIEKSVGVRSMEVKSKPRGGARCCMCFDPFSIQSVNVIVFFCCHAYHMTCL
MDSTYTSEMKGSVATPSERVDDYGYDDSDVDDNGDDDTQSGGSRMRCILCTTAASGVK
NT seq
2877 nt
NT seq
+upstream
nt +downstream
nt
atggctccgattccgcccgataacggcgtcgaaggagacgatgagagagaggaagagggc
gaggaggaagaagaagaggaagaggaagagaggnaggaggaggaagaggaggagccgagg
ctcaagtaccagcgaatgggaggcagcattcccacgctgttggctagcgacgtggcgtcc
tgcatcgccgtcgcggaacgaatgatcgcgctcgggactcacggcggcaccgttcatatt
ctcgattttctcgggaatcaggttaaggaattccctgctcatactgctgcagtgaatgat
cttagcttcgacatagaaggtgaatttataggaagctgttcagacgatgggtctgttgta
ataaatagtcttttcactgatgagaaaatgaagtttgagtatcatcgtccaatgaaagct
attgcactagacccagattatgcaagaagatcatctagaagatttgtagctggtggttta
gctggtcatttatattttaatacaaaaagatggctgggctttaaagatcaggttttgcac
tctggtgaaggtcctatacatgcggtgaagtggagaacaagtctcattgcctgggcaaat
gatgcaggtgttaaagtgtacgatactgcaaatgatcaacgtataacattcattgaaagg
ccacgaggaagcccacgtcctgagcttttgctccctcacttattttggcaggatgactca
ttgttggtcattggctggggaacatcaatcaaaatcacatcgataaaaacaaatcaatca
agagccaccaatggaacatataagcatgtcccaatgtctggtatgaaccaggtggatatt
gtggcatcctttcagaccagctatttcatttccgggattgccccttttggtgatactttg
gtcattctagcatatatccctggtgaagaagatggggaaaaggaatttagcagctctgtt
ccatcacgacagcagggaaatgcacagagaccagaagtacgtattgtaacatggaataat
gatgaactttcaacagatgccttacctgtacacggctttgagcattacaaggcaaaggac
tattcccttgctcacgctcctttctcaggtagcagctatgctggcggccggtgggctgaa
ggtgatgaaccactgtactatattgtttccccaagggatgtagtcattgcaaaaccaaga
gatgctgaagatcatattgcttggcttcttcaacatggttggcatgaaaaagctttggct
gcagttgaagcaggccagggacggagtgaacttcttgatgaggttggttctagatacctt
gatcatatgattgtggaaagaaaatatgctgaagccgcatctgtatgtcctaaattgttg
cgaggatctgcttcggcatgggaaagatgggttttccactttgctcatttgcgtcagctt
ccagtattagtcccatacattccaacagaaaacccaagacttcgtgatactgcttatgag
gttgctcttgtagctctcgctacaaatccatcttttcataaggagcttttgtcaactgtt
aaatcttggccacccgtgatctactcttcattgcctgttatctcagctatagaacctcag
cttaatacatcatccatgacagatgcccttaaggaggcactagcagtgttgtatgagatt
gatgggcaatatgagaaagcatttgcactatatgctgatcttttgaagccagacatattt
tccttcattgaaaagcacaatttgtatgattctattcgggaaaaggttgtccagttaatg
atgctagattgcaagcttgcagttcctttgttgatccaaaacaaggatttaataactcca
tctgaagttgttaaacaacttttgaatgcaattgataagtgtgattccagatatttcttg
catgcatacttgcatccactatttgaagcagatcctcattctggaaaagaatatcacgat
atgcaggtagagctttatgcagaatatgatccaaagatgcttcttccttttcttcgtagt
agtcaacattataccctggagaaggcatatgaaatttgtattggaagagatcttttaagg
gagcaagtgttcattcttggaagaatgggaaatgctaaacaagcccttgctgtaatcata
aataaacttggggatattgaagaggctgtagaatttgtaaatatgcaacatgatgatgaa
ctctgggaggagttaatccagcagtgtcttgataaacctgaaatggtgggcgtgttattg
gagcacacagttggaaacctagatcctctctatattgtgaatatggttcccaacggattg
gagattcctaggctcagggatcgattagtcaaaatcgtcaccaattacaggactgaaaca
tctttaaggcatgggtgcaatgatattctcaaggctgatattgtcaacctcttggtcaaa
tactacaaagaggcaacacatggaatttacttgagcaatgaagaagatgaggcacggtca
aagagaaatgatagtagggcttctcaggtgatcgaaaaatcggtaggtgtgagaagtatg
gaggttaagtcaaaacccaggggcggtgcaaggtgttgcatgtgtttcgatcctttttct
atacaaagtgttaatgtcattgttttcttttgctgtcatgcttatcacatgacttgtctt
atggattccacctatacgagtgaaatgaaagggagtgtggccactcctagtgagagagta
gacgattatgggtatgacgacagtgatgtggatgacaatggtgatgatgatacccaatcg
ggtggttcccgtatgcgttgtatcttatgtactactgctgctagtggagtgaagtga
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