Monodelphis domestica (gray short-tailed opossum): 100018117
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Entry
100018117 CDS
T01031
Symbol
LIG4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
mdo
Monodelphis domestica (gray short-tailed opossum)
Pathway
mdo03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mdo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
100018117 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mdo03400
]
100018117 (LIG4)
Enzymes [BR:
mdo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
100018117 (LIG4)
DNA repair and recombination proteins [BR:
mdo03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
100018117 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
BRCT
DNA_ligase_A_C
BRCT_2
RNA_ligase
RTT107_BRCT_5
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
100018117
NCBI-ProteinID:
XP_007501369
Ensembl:
ENSMODG00000025064
UniProt:
F6SA46
LinkDB
All DBs
Position
7:85645962..85661119
Genome browser
AA seq
911 aa
AA seq
DB search
MATSQPSRTVASQVPFADLCSTLERIQKSKARPEKIKYFKEFLDSWRRFHDALHKKEKEV
TDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPKEGKDAQKLLNYRTPTGTRG
DAGDFAMIAYFVLKPRCPKQGSLTIQQVNDILDLIASNNSANRKDLVKKNLLQLITQSSA
LEQKWLIRMIIKDLKLGFSQQTIFSLFHRDAAELHNVTTDLEKVCRQLHNPLVGLSDISI
TLFSAFKPMLAAVADIQRIEKDMKHQGFYIETKLDGERMQMHKDGDVYKFFSRNGYDYTE
QFGDSSLNGSLIPFIHKAFKTNIQNCILDGEMMAYNPNTQTFMQKGSKFDIKRMVEDSDL
QTCYCVFDVLMVNNKKLGHEALRKRYEIISTVFTPIKGRLEVVQKTEANTKKEVIDALNE
AIDKREEGIMIKNPLSIYKPDKRGEGWLKIKPEYINELMDELDILIVGGYWGKGLRGGMM
SHFLCAVAETPPPGEKPSVFYTLCRVGSGYTMKELYDLGLKLSKHWKPFHKRAPPNSILC
GTEKPEVYIEPCNSVIVQVKAAEIVSSDMYKTNCTLRFPRIEKIREDKEWYKCMTLDELE
NLRGKASGKLASKHLFIGGDDEEPQGKKRKAIKVKKTIGIIEHLKAPDLSNINRISNVFE
DVEFCVMTGTDSHSKPDLESHIAELGGYIVQNPGPDTYCVIAGTENVRVRNIISSNKHDV
VKPEWLLECFKAKECVPWQPQFMIHMCPSTKEHFACEYDCYGDSYFADTDVVQLKEVFSR
IKNVKEESPNEMASVIADLEDRYSWDNCPLSMFRHCTMYVDIYAIINDLTTQIEGTRLAI
KALELRFHGAKVVSCLEEGVSHVIIGEDHSRVEEFKAFRRTLKRKYKILQELWVTDSLKK
GELQEENQYLI
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atggctacttcacaaccttcacgaacagtagcatcacaggtgccttttgcagatttgtgt
tcaactttagaacgaatacagaaaagtaaggcccgtccagaaaaaatcaaatacttcaag
gaatttttagattcatggcggagatttcatgatgctcttcataaaaaagaaaaagaagtc
acagactctttttatccagccatgagacttattcttccccaactagaacgagagaggatg
gcctatggaattaaagaaactatgcttgctaagctttatattgagctgcttaatttacca
aaagaaggaaaagatgctcagaaacttttaaactacagaacaccaactggaactcgtgga
gatgctggagacttcgcaatgattgcatactttgtgttgaagccacgatgtccaaagcaa
gggagcttaacaatacaacaagtcaatgacattttagacttaattgctagcaacaattca
gccaacagaaaggatctggtaaagaagaatctccttcagctcataactcagagttcagct
cttgaacaaaagtggcttatccgaatgatcataaaggatttaaaactgggttttagccaa
caaactatattttctctttttcacagagatgctgctgagctgcataatgttacaactgat
ctagaaaaagtctgcagacaacttcacaatcctttagttggactcagtgatatttcaatc
acattattttctgcttttaaaccaatgctagctgctgtggcagatattcagcggatcgag
aaggacatgaaacaccagggtttctacatagaaacaaaactagatggtgagcgcatgcaa
atgcacaaagatggagatgtgtataagtttttttctcgaaatggatatgattacactgaa
cagtttggtgactcttcccttaatggttctttaataccatttattcataaagctttcaag
acaaacatacaaaactgtattcttgatggtgaaatgatggcctataatcccaacacacaa
acattcatgcagaagggaagtaagtttgatattaaaagaatggtagaggattctgatcta
cagacatgttattgtgtttttgatgtactgatggtaaataataaaaaactggggcatgag
gccctgagaaaaaggtatgaaattattagtaccgtctttacaccaataaaaggtagactt
gaagtggtacagaaaacagaggcaaacaccaaaaaagaagtcattgatgccttaaatgaa
gcaatagataaacgagaggaggggatcatgattaaaaatccactttccatttacaagcca
gataaacgtggtgaaggatggttaaaaattaagccagaatatataaatgagttaatggat
gaactggatattttaattgttggtggctattggggtaaaggtttgcgaggaggaatgatg
tctcattttttgtgtgcagtagcagaaacacctcctcctggtgaaaaaccatctgtgttt
tatactctttgtcgtgttggttctggatataccatgaaagaactatatgaccttggtttg
aaattatccaaacactggaaaccttttcataaaagagctccaccaaatagcatcttatgt
ggtacagagaaaccagaagtttacattgaaccttgtaattctgtcattgttcaggttaaa
gcagcagaaattgtcagcagtgatatgtataaaactaattgtacactacgattccctcga
attgaaaagataagagaagataaagagtggtataagtgtatgactctagatgaattagaa
aacctcagagggaaagcatctggaaagcttgcttctaaacacctctttataggtggtgat
gatgaagaaccacagggaaaaaaaaggaaagctattaaggttaagaaaactattgggatc
attgaacacttaaaagctcctgatctttctaacataaacagaatttctaatgtatttgaa
gatgtggaattttgtgttatgactggaacggacagccattcaaaacccgatctggagagt
cacatagctgaattaggtggttatattgtacagaaccctggcccagatacttactgtgta
attgcaggtactgagaatgtgagagtgagaaatatcatctcttcaaacaaacatgatgtc
gtaaagccagagtggctcttagagtgctttaaggccaaagaatgtgtgccatggcagcct
caatttatgattcacatgtgtccttccacaaaagaacactttgcctgtgaatatgactgc
tatggtgacagttactttgctgatacagatgtggtacaactgaaggaagtgttttcaaga
attaaaaatgttaaggaagagagtcctaatgaaatggcttcagtaattgcagatttagaa
gatagatattcttgggacaactgccctctcagtatgttccgacactgtaccatgtatgtg
gatatatatgctattattaatgacctcactacacaaatcgagggaaccagactagccatt
aaagctctggagctgcggttccatggagcaaaagttgtttcatgtttagaagaaggagtg
tcccatgtaatcattggagaggatcatagtcgtgttgaggaattcaaagctttccgtaga
actcttaagagaaagtataaaatcctacaagaactttgggtaactgattctctgaaaaaa
ggtgaattacaagaagaaaatcagtacttgatatga
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