Monodelphis domestica (gray short-tailed opossum): 100022236
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Entry
100022236 CDS
T01031
Symbol
SF3B1
Name
(RefSeq) splicing factor 3b subunit 1
KO
K12828
splicing factor 3B subunit 1
Organism
mdo
Monodelphis domestica (gray short-tailed opossum)
Pathway
mdo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mdo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100022236 (SF3B1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mdo03041
]
100022236 (SF3B1)
03036 Chromosome and associated proteins [BR:
mdo03036
]
100022236 (SF3B1)
Spliceosome [BR:
mdo03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
100022236 (SF3B1)
Complex B
100022236 (SF3B1)
Complex C
U2 SnRNP specific factors
100022236 (SF3B1)
Chromosome and associated proteins [BR:
mdo03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
100022236 (SF3B1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
HEAT_EZ
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
TALPID3
Motif
Other DBs
NCBI-GeneID:
100022236
NCBI-ProteinID:
XP_001369944
Ensembl:
ENSMODG00000012275
UniProt:
F6YFZ8
LinkDB
All DBs
Position
4:complement(218433661..218482477)
Genome browser
AA seq
1303 aa
AA seq
DB search
MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGNDSRFAGYVTSIAA
TELEDDDDDYSSSTSLLGQKKSGYQPTVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK
KHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGE
LKVVNGASSQPPSKRKRRWDQTADQTPGATPKKLSNWDQAETPGHTPSLRWDETPGRAKG
SETPGATPGSKIWDPTPSHTPAGAATPGRGDTPGHATPGHGGATSSARKNRWDETPKTER
DTPGHGSGWAETPRTDRGGDSIGETPTPGASKRKSRWDETPASQMGGSTPVLTPGKTPIG
TPAMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAGY
VPIRTPARKLTATPTPLGGMTGFHMQTEDRTMKSVNDQPSGNLPFLKPDDIQYFDKLLVD
VDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMS
PTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLA
KAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQAR
HTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYGI
ESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSPD
EEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVELA
NKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAFQ
EQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAVV
MKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRLT
PILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNTF
GYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPEL
NVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVYG
FGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARKV
RDVYWKIYNSIYIGSQDALIAHYPRIYNDEKNTYIRYELDYIL
NT seq
3912 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaaaactcacgaagatattgaagcacagattcgagaaatccaaggg
aagaaggcagctcttgatgaagctcaaggagtgggccttgattctacaggttattatgac
caagaaatttatggtggtaatgacagcagatttgctggctatgtgacatctatcgcagca
actgaattagaagatgatgatgatgactattcctcatccacaagcctgcttggccagaag
aaatcaggatatcaacccacagtggcattgcttaatgacataccacagtcaacagaacag
tatgacccatttgctgaacatcgccctccaaagattgcagaccgcgaagatgaatataaa
aagcacaggcgaactatgataatttctccagagcgtcttgatccttttgcagatggaggc
aagacacctgatcctaaaatgaatgctaggacatacatggatgttatgcgagaacagcat
ttgactaaagaagagagggaaattaggcaacagctagcggaaaaagctaaagctggagaa
cttaaagttgtcaatggtgcatcatcccagcctccatcaaaacgcaaaaggcgttgggat
cagacagctgatcagactcctggtgcaactccaaaaaagctctcaaactgggatcaagca
gagactcctgggcatacaccttctttgaggtgggatgagacacctggtcgtgcaaagggt
agtgagacacctggagcaacacctggctcaaaaatatgggatcctactcctagccatact
ccagcaggagctgccactcctggacgtggtgatacacctggtcatgcaacaccaggccat
ggaggtgcaacttcaagtgcacgtaaaaacagatgggatgagactcctaaaactgagaga
gatactcctggtcatggaagtggttgggctgagactcctcgtacagatcgtggtggagat
tcaattggtgaaacaccaactcctggagcaagcaaaagaaagtcacgttgggatgaaaca
ccagctagtcagatgggtgggagcactcctgttctgactcctggtaaaacaccaattggc
acacctgctatgaacatggcaacacccactccaggtcacataatgagcatgactcctgaa
caacttcaggcatggagatgggagagagaaattgatgaaagaaatcgtcctctttctgat
gaagagctggatgctatgttcccagaaggatataaggtactgcctcctccagctggctat
gttcctattcgtactccagctcgaaagcttacagcaactcctacacctttaggtggcatg
actggattccacatgcaaactgaagataggactatgaaaagtgttaatgaccaaccatct
ggaaatcttccatttttaaaacctgatgatattcaatactttgataaactgttggtggat
gtagatgaatcaacacttagtccagaagaacaaaaagagagaaaaataatgaaattgctt
ttaaaaatcaagaatggtacacctccaatgagaaaggctgcattgcgtcaaatcactgac
aaagcacgtgaatttggagctgggcctttgtttaatcagattcttccattgctgatgtct
ccaacacttgaagatcaagagcgtcatttgcttgtaaaagttattgatagaattttgtac
aagctggatgatttggttcgaccatatgtgcataagatccttgtggttattgaaccacta
ttgattgatgaagattactatgccagagtggaaggcagggaaataatttcaaatttggcc
aaggctgctggcctagcgaccatgatttccactatgagacctgatattgataatatggat
gaatatgtccgtaacacaacagctcgagcttttgctgttgttgcctctgccttgggcatt
ccttctctgttgcccttcttgaaagctgtgtgtaagagcaagaaatcctggcaggcgagg
catactggtattaagattgtgcagcaaattgctattcttatgggttgtgctatcctccct
cacctcagaagtttagttgaaatcattgagcatggtcttgtggatgaacaacagaaagtc
cggaccattagtgctttggctattgctgctctggctgaagcagctactccttatggcatt
gaatcttttgattctgtgttaaagcctctgtggaaaggtatccgccagcacagaggaaag
ggcttggctgctttcttgaaagctattggataccttattcctcttatggatgcagaatat
gcaaactactatactagagaagtcatgttaatccttatcagagaattccagtctcctgat
gaagaaatgaaaaaaattgtgttgaaggtggtaaagcagtgctgtgggacagatggtgta
gaagcaaattacatcaaaacggagattcttcctccatttttcaaacatttttggcaacac
agaatggctttggaccgaagaaattacagacagttagtagataccacagtggaattggca
aacaaagtaggtgcagcagaaattatttcccggattgtggatgatctgaaagatgaggct
gaacagtacaggaagatggttatggaaactattgagaaaataatgggcaacttgggtgca
gcagatatagatcacaaacttgaagagcaacttattgatggcatcctttatgcctttcag
gaacaaaccacagaggactcagtgatgttgaatggttttggcacagtggtcaatgccctt
ggcaaaagagtcaaaccatacttgccccagatttgtggtacagttttgtggcgtttgaac
aacaaatcagccaaagttagacaacaggctgctgacctcatctctcgtactgctgttgtt
atgaaaacttgtcaggaggaaaaattgatgggacatttgggtgttgtcttgtatgaatac
ttgggtgaagagtaccctgaagtgttgggaagcatcctgggagcactgaaggccattgtg
aatgtaataggtatgcacaagatgactccaccaattaaggacttactgccaaggcttaca
cctatcttaaagaacagacatgagaaagtacaagaaaactgtattgatcttgttggacgt
attgctgacaggggagcagaatatgtctctgcaagagaatggatgagaatttgctttgaa
cttctagaattgttaaaagctcataaaaaagctatccggagagccacagtcaacacattt
ggttatattgcaaaagccattggaccacatgatgtgttggccacactgctaaacaacctc
aaagttcaagaaagacagaaccgagtatgtactacagttgccatagctattgtagcagag
acatgttcacccttcacagtcctgcctgcactaatgaatgaatatcgagttcctgaactg
aatgttcaaaatggtgttttaaaatcactttctttcttgtttgaatacattggagaaatg
ggaaaagactatatttatgctgtcacaccattacttgaagatgctttgatggacagagat
cttgtacatagacagactgctagtgcagtggtgcagcacatgtctcttggggtttatgga
tttggttgtgaagattctcttaatcatttgttgaattatgtatggcctaatgtatttgag
acatctccccatgttattcaagcagttatgggagccctggaaggcctaagagttgctatt
ggaccatgtagaatgttgcaatactgtttgcagggtttgtttcacccagccagaaaagtc
agagatgtatactggaagatttacaattctatctacattggttcacaggatgcactcata
gcacattatcccaggatctacaatgatgaaaaaaacacctatattcgttatgaacttgac
tatatcttataa
DBGET
integrated database retrieval system
