Monodelphis domestica (gray short-tailed opossum): 100029695
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Entry
100029695 CDS
T01031
Symbol
COL11A1
Name
(RefSeq) collagen type XI alpha 1 chain
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
mdo
Monodelphis domestica (gray short-tailed opossum)
Pathway
mdo04820
Cytoskeleton in muscle cells
mdo04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
mdo00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
100029695 (COL11A1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
100029695 (COL11A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
mdo00536
]
100029695 (COL11A1)
Glycosaminoglycan binding proteins [BR:
mdo00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100029695 (COL11A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
100029695
NCBI-ProteinID:
XP_001372234
Ensembl:
ENSMODG00000003278
UniProt:
F7EG27
LinkDB
All DBs
Position
2:complement(470298655..470599484)
Genome browser
AA seq
1807 aa
AA seq
DB search
MERWSTRWKTKRWLWDSTITTFVVITLIFQAAEVRGATPVDVLKALEFHNSPEGISKTAG
FCTNRRNSKGSDTAYKVTKQAQISAPTKQLYPGGTFPQDFSILFTVKPKKGIQSFLFSIY
NEQGIQQIGVEVGRSPVFLYEDQHGKPAPEDYPLFRTVNIADGKWHRIAISVEKKTVTMI
VDCKKKTTKPLQRSDKAVVDTNGITVFGTRILDEEVFEGDIQQLLITADPKAAYDYCEHY
SPDCDSPTPNAAQAQEPHIEEYAPEDIIEYDYEYGEAEYKEAESITEAPPLIEETIAQTE
ANVVDDFQEYNYGTSESYQTENPRRVSGPNEQDPVEEVFTEEYITGEDYESQRKTVEDNQ
YENKGVDGRDSDLLVDGDLGEYDFYEYKEYEDKPTNPTNEEFGPGVPAETDITETSIHGH
GAYGEKGQKGEPAVVEPGMLIEGPPGPAGPAGLMGPPGLQGPTGPPGDPGERGPAGRPGL
PGADGLPGPPGTMLMLPFRYGGDSSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGR
PGPVGGPGSSGAKGEGGEPGPQGPRGVQGPPGPTGKAGKRGRPGADGGRGMPGEPGAKGD
RGFDGLPGLPGDKGHRGERGPQGPPGSPGEDGMRGEDGEIGPRGLPGEAGPRGLLGPRGT
PGPTGQPGIAGVDGPPGPKGNMGPQGEPGPPGQQGIPGPQGLPGPQGPIGPPGEKGPQGK
PGLAGLAGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGE
KGEDGFPGFKGDMGLKGDRGEVGQLGPRGEDGPEGPKGRAGPTGDPGGPGQAGEKGKLGV
PGLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGK
PGPKGTSGSDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGK
TGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGVSGK
DGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPLGSPGERGSAGTAGPIGLPGRPGP
QGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGS
KGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGL
QGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPSGSVGSVGGVGEKGEPGE
AGNPGPPGESGPGGPKGERGEKGEAGPPGAAGPPGIKGPPGDDGPKGNPGPVGFPGDPGP
PGEPGPAGQDGVGGDKGEDGDAGQPGPPGPSGEAGPPGPPGKRGPPGAAGSEGRQGEKGA
KGEAGSEGAPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPLGPPGL
PGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGTPGAKGDGGIPGPAGPVGP
PGPPGLPGPQGPKGNKGSSGPTGQKGDSGLPGPPGPPGPPGEVIQPLPILSPKKTRRHAE
GMQADAGDNILDYSDGMEEIFGSLNSLKQDIERMKYPMGTQNNPSRTCKDLQLSHPDFPD
GEYWIDPNQGCSGDSFKVYCNFTAGGETCIYPDKKSEGVRISSWPKEKPGSWFSEFKRGK
LLSYLDVEGNSINMVQMTFLRLLSASARQNFTYNCHQSVAWYDVTSNSHDKALRFLGSND
EEMSYDNNPYMKALYDGCASRKGFGKSVIEINTPKIDQVPVVDVMINDFGDQNQKFGFEV
GPVCFLG
NT seq
5424 nt
NT seq
+upstream
nt +downstream
nt
atggagcgttggtccacaaggtggaaaacgaaaaggtggctttgggactccacgattacc
accttcgtcgtaataactttaatctttcaagctgcggaggtcagaggagctacaccagtt
gatgtgctaaaagcattagagtttcataattcaccagagggaatatcaaaaacagcagga
ttctgcacaaacaggaggaattcaaaaggctcagatactgcttataaagttacaaaacaa
gcacagatcagtgcccccacaaaacagctatatccaggtggaacatttcctcaagatttt
tcaatattattcacagtaaagcccaaaaaaggaatacaatccttccttttttccatctat
aatgagcagggtattcagcaaattggtgtggaggttggaaggtctcccgtcttcctctat
gaagatcaacatggaaaaccagccccagaagactaccctcttttcagaacggtcaacatt
gctgatgggaagtggcatcggattgctatcagcgtggagaaaaaaactgtgactatgatt
gttgactgcaagaagaaaacaactaaacctctccagagaagtgacaaagcagttgtcgac
accaatgggatcacagtttttggaacaaggattttggatgaagaagtttttgagggtgat
atccaacaactactaattacagctgaccctaaagcagcttatgactactgtgagcattat
agtccagactgtgactccccaacccccaatgctgctcaggcccaggaaccacatattgag
gagtatgcaccagaagatattatcgagtatgactatgagtatggggaagcagagtataaa
gaggctgaaagtataacagaggcacccccactaattgaggaaaccatagcacaaactgag
gcaaatgttgtggatgattttcaagaatacaactatggaacatctgaaagctaccagact
gaaaatcctagacgggtatcaggaccaaatgagcaagatccagttgaagaagtatttact
gaagaatacataactggagaggattatgaatcccagagaaaaacagtcgaggataaccaa
tatgaaaacaaaggagtagacggcagggattctgatcttctggtagatggagatttagga
gaatatgatttttatgaatataaggaatatgaagataaacccaccaatcccactaatgaa
gaatttggtccaggtgtaccagctgaaactgatatcacagaaacaagcatacatggtcat
ggtgcatatggggaaaagggacagaaaggagaaccagctgtagttgaacctggaatgctt
attgaagggccaccaggaccagctggacctgctggtcttatgggtcctcctggtttgcaa
ggccccactggacctcctggtgatcctggtgagaggggaccagctggacgtcctggttta
ccaggggctgatggcttacctggccctcctggtaccatgttgatgttaccatttcgctat
ggaggagatagttccaaaggaccaaccatctctgctcaagaagctcaggctcaagctatt
cttcagcaagctcggattgctctccgaggtccacctggcccaatgggtctaactggaaga
ccaggtcctgtgggtggtcctggttcatcaggggccaaaggagaagggggtgaaccaggt
cctcagggtcctcgtggtgttcaaggtcctcctggtccaactggtaaagctggaaaaagg
ggtcgcccaggtgctgatggaggaagaggaatgccaggagaaccaggggcaaagggtgac
agaggatttgatgggcttcctggtctacctggtgacaaaggccatagaggagaacgtggt
ccccaaggtcctcctggctctcctggtgaagatggaatgagaggagaagatggagaaatt
ggaccaagaggtcttccaggtgaagctggtccacgaggtctgttgggacccagaggaaca
cctggccctacaggacagcctggtattgcaggtgtggatggtccacctggtccaaaagga
aatatgggtcctcaaggggaacctggacctcctggtcagcaaggaattccaggcccacaa
ggtcttcctggtccccaaggcccaattggccctcctggggaaaaaggccctcaaggaaaa
cctggtcttgctggacttgctggtgctgatggtcctcctggtcatcccggcaaagaaggc
caatctggagaaaagggagctctgggcccccctggtccacagggtcccattggttatcct
ggcccccggggtgtgaagggtgctgatggtgtcagaggacttaagggctctaaaggtgaa
aagggtgaagatggctttcctgggtttaaaggcgacatgggtcttaaaggagacagagga
gaagttggacagttgggcccaagaggagaggatggccctgaaggtcctaaaggtagagca
ggtccaactggggaccctggtggtcctggccaagctggagagaaggggaaacttggagtt
ccaggattaccaggctatcccggaagacaaggtccaaagggttccactggttttccaggg
tttccaggtgccaatggagagaaaggtgccaggggtgtagctggcaaaccaggcccccgg
ggacagcgaggtcctacaggtccacgtggttcaagaggtgcaaggggtcctacaggaaaa
ccaggtccaaagggaacttccggtagtgatggcccacctggtccacctggtgaaagagga
cctcaaggacctcagggccctgttggattccccggaccaaaaggccctcctgggccacct
ggaaaagatgggctgcctggtcaccctggtcaacgtggagaaactggatttcaaggcaaa
acaggtcctcctggaccaggtggcgttgttggaccacagggcccaactggtgaaactggt
ccaataggtgaacgaggtcatcctggacctccaggccctcctggtgagcaaggacttcct
ggtgcagctggaaaagagggtgcaaagggtgaccctggtcctcaaggtgtctcagggaaa
gatggaccagcaggacttcgtggtttcccaggagaaagaggtcttcctggagctcagggt
gcacctggcctgaaaggtggggaaggtccccagggcccacctggtccacttggctcacca
ggagaacggggttctgcaggtacagctggtccaattggtttaccaggtcgcccaggacct
caaggtcccccaggtccagcaggagaaaaaggtgctcctggagaaaaaggtccccaaggt
ccagctggacgagatggagtacaaggacctgtgggtcttccaggtccagctggccctgca
ggttccccaggagaagatggggataagggtgaaattggtgaaccaggacagaaaggaagt
aaaggtgacaagggagaaaatggtcctcctggtcccccaggccttcaaggacctgttggt
gcccctggtattgctggaggtgatggggagcctggaccaagaggtcagcagggaatgttt
ggtcaaaaaggtgatgaaggtgctagaggattccctggccctcctggtcccattggtctt
cagggcctgcctggtccccctggagaaaaaggtgaaaatggtgatgttggtccaatgggt
ccacctggtccaccaggcccaagaggtcctcagggtcccaatggtgctgatggcccacaa
ggtccttcaggatcagttggctcagttggtggtgttggtgaaaagggtgaacctggtgaa
gcaggaaatcctggccctcctggggagtctggccctggtggtccaaaaggtgaacgagga
gaaaaaggtgaagcaggtccccctggtgctgctggacctccaggaatcaagggaccccca
ggtgatgatggccctaaaggcaatccaggtcctgttggcttccctggagatcctggtcct
cctggtgaaccaggccctgctggtcaagatggtgttggtggtgataagggtgaagatgga
gatgctggtcaacctggtcctccaggtccgtctggtgaagctggcccccctggacctcct
gggaagagaggtcctcctggagctgctggatctgaggggagacaaggtgaaaaaggtgcc
aagggagaagcaggatcagaaggtgcccctggcaaaactgggcctgttggccctcaagga
ccagcaggaaaacctggtccagaaggtcttcgtggtattcctggtcctgtgggagaacaa
gggcttcctggagctgcaggtcaagatggcccacctggtcctttaggcccccctggctta
cctggactgaagggtgaccctggttctaaaggggagaagggacatcctggtttgattggt
ctgattggtcctccaggagaacaaggagaaaaaggcgacaggggacttccaggaacacaa
ggaactcctggagccaagggtgatggtgggattcctggtccagctggtcccgttggcccc
cctggtcctccaggcttgccaggtcctcaaggtccaaagggcaacaaaggttcttctggt
cccactggtcagaaaggtgacagtggtcttcctgggccacctgggcctccaggccctcct
ggagaagtcatccagcctttaccaatcctgtcacccaaaaagacaagacgacatgctgag
ggtatgcaagctgatgcaggagataacatccttgattattctgatggcatggaggagatc
tttggttcgctcaactctctgaaacaagacattgagcgaatgaaatatcccatgggcacc
cagaacaatccatcccgaacttgtaaagatctgcaactctcccatccagacttcccagat
ggtgaatattggattgatccaaaccaaggttgctctggcgattccttcaaagtttactgt
aacttcacagctggtggagaaacttgcatttaccccgataagaaatctgaaggagtgaga
atttcatcatggccaaaggagaaaccgggaagctggtttagtgaatttaagagaggaaaa
ttgctctcttacttggatgtggaagggaattccattaatatggttcaaatgacattcctg
agacttctgagtgcctcagccaggcaaaatttcacctataattgtcatcagtcagttgct
tggtatgatgtgacatccaacagtcatgacaaagccctccggttcttgggatcaaacgat
gaggagatgtcttatgacaacaacccttacatgaaagctctctatgatggctgtgcttca
agaaaaggctttgggaagagtgtgatagaaatcaacacccctaagatagaccaagtgcct
gttgttgatgtcatgattaatgactttggagatcagaatcagaagtttggattcgaagtt
ggaccagtttgtttccttggttaa
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integrated database retrieval system
