Mycobacterium dioxanotrophicus: BTO20_29155
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Entry
BTO20_29155 CDS
T05102
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mdx
Mycobacterium dioxanotrophicus
Pathway
mdx03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mdx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BTO20_29155
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mdx03400
]
BTO20_29155
Enzymes [BR:
mdx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BTO20_29155
DNA repair and recombination proteins [BR:
mdx03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BTO20_29155
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ART72075
UniProt:
A0A1Y0CAT0
LinkDB
All DBs
Position
complement(6020794..6023052)
Genome browser
AA seq
752 aa
AA seq
DB search
MERYERVRLTNPDKVLYPATGTTKAEVFDYYLSIAEVMLPHMAGRPVTRKRWPNGVDEPS
FFEKQLASSAPDWLARGTIVHKSGTTTYPVIDTREGLAWIAQQAALEVHVPQWRFDHGEV
GPATRIVFDLDPGEGVTMPQLCEVAQAVRELMGDIGLTTYPLTSGSKGLHLYVPLADPVS
SQGASVLARRVAQQLEHAMPQQVTATMTKSLRAGKVFLDWSQNNAAKTTIAPYSLRGREF
PTVAAPRTWDEIGDPDLRHLRFDEVLHRVSRDGDLLVGLDDDAPVADRLTTYRSMRDAAK
TPEPVPKSVVPTGNNDRFVIQEHHARRLHYDLRLERDGVLVSWAVPKNLPETTSVNHLAV
HTEDHPIEYLDFHGAIPKGEYGAGKMIIWDTGSYEAEKFRVTDDPDAKNGEVIFTLRGSR
LDGRYALIQTEGKNWLAHRMKDQPRVQLQDFAPMLATEGSVAKLKESQWAFEGKWDGYRL
LVDADHGQLQLRSRSGRDVTGEYPQLQALAADLADHHVILDGEVVALDEAGVPSFGEMQN
RARSTRVEFWAFDILLLDGRSLLRAKYTDRRRLLEALAAGGGLIVPPLLPGDGPEAMDHS
REQRFEGVVAKKRDATYQPGRRSASWIKDKFWNTQEVVIGGWRQGEGGRSSGIGALMLGI
PAEGGLHFAGRVGTGFTEKELSKLKKLLAPLHIDESPFNAPLPTLDARGVTFVRPELVGE
VRYSERTSDNRLRQPSWRGLRPDKTPDDVVWE
NT seq
2259 nt
NT seq
+upstream
nt +downstream
nt
atggagcgctacgaacgggttcggctgacgaaccccgacaaggtgctctatcccgccacc
ggcaccaccaaagccgaggtgttcgactactacctcagcatcgccgaggtcatgctgccg
cacatggcaggccggccggtcacccgtaagcgctggcccaacggagtggacgagccgtcg
ttcttcgagaagcaactcgcatcgtcggccccggattggctggcgcgcggcaccatcgtg
cacaagtccgggacgacgacctacccggtgatcgacacccgtgaggggctggcctggatc
gctcagcaggccgcattggaagtgcatgtcccgcaatggcgattcgaccacggtgaggtg
ggtcccgcgacgaggatcgtgttcgacctcgaccccggcgagggggtcaccatgccgcag
ctgtgcgaggtggcccaggcggtgcgtgagctgatgggcgacatcggcctgacgacgtac
ccgttgaccagcggcagcaagggcctgcatctgtatgtgccgctggctgatccggtcagc
tcccagggggcgtcggtgctcgcgcggcgggtggcccagcagctggagcacgccatgccg
caacaggtgacggccaccatgaccaagagcctgcgggcaggcaaggtgttcctggactgg
agtcagaacaacgccgccaagaccaccatcgcgccgtattccctgcgcgggcgggagttt
ccgactgtcgccgcgccccgcacctgggacgagatcggggacccggatttgcgtcatctg
cggttcgacgaagtgctgcaccgggtttcgcgggatggtgacctgctggtcgggctcgac
gacgatgcgccggtggccgacaggctcaccacctaccgcagcatgcgcgacgcggcgaag
acaccggagcccgtacccaaaagcgttgtcccgacgggtaacaacgaccggttcgtgatc
caggagcaccacgcccgccgcctgcactacgacctgcggctggaacgcgacggcgtgctg
gtgagctgggccgtgcccaagaacctgcccgaaaccacctccgtgaatcaccttgcggtg
cacaccgaggaccatcccatcgagtatctggacttccacggcgcaatcccgaaaggggag
tacggcgccgggaagatgatcatctgggacaccggaagctacgaggcggagaagttccgg
gtcaccgacgacccggatgccaagaacggcgaggtcatcttcacattgcgcggcagccgc
ctcgacggccggtacgccctcatccagaccgagggcaagaactggctcgcgcaccggatg
aaggatcagccccgggtgcaactgcaggacttcgcgccgatgctggccaccgaagggtcc
gtcgccaaactcaaggaatcccaatgggcattcgaaggtaagtgggacggctaccggctg
ctggtcgatgccgaccacggtcagctgcagctgcgctcacgcagcggacgcgatgtcacc
ggcgagtatccgcagctgcaggcgttggccgccgatctcgccgaccaccacgtgatactc
gacggcgaggtcgtcgcgctcgacgaggcgggcgtaccgagtttcggtgagatgcagaac
cgggcgcggtccacccgggtcgagttctgggcgttcgacattctgctgctcgacgggcgg
tcgttgttgcgggccaagtacaccgatcgccgtcggctgctggaggcgctggcagccggt
ggtgggctgatcgtgccgccgctgctgcccggtgacggacccgaggccatggaccactcc
cgcgagcagcggttcgaaggcgtcgtcgccaagaagcgggacgccacctatcaacccggc
cggcggtcggcgtcgtggatcaaggacaagttctggaacacccaagaggtggtgatcggc
ggctggcgccaaggcgagggcggtcgcagcagcggtatcggcgcgctgatgctcggaatc
ccggccgagggcgggctgcacttcgccggccgcgtgggtaccggcttcacggagaaggag
ttgagcaagctcaagaaactgcttgccccgctgcacatcgacgaatcaccgttcaacgca
ccacttcccacgctcgacgcgcgaggggtgaccttcgtgcggccagagttggtcggcgag
gtgcgctacagcgaacgcacgtccgacaatcggctgcgccagccgagctggcggggtctg
cgcccggacaagacgcccgacgatgtggtgtgggagtag
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