Methanosarcina sp. WH1: MSWH1_0007
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Entry
MSWH1_0007 CDS
T03851
Name
(GenBank) RNA ligase, family
KO
K07468
DNA/RNA ligase [EC:6.5.1.-]
Organism
mef
Methanosarcina sp. WH1
Brite
KEGG Orthology (KO) [BR:
mef00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
MSWH1_0007
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Motif
Pfam:
Lig_C
RNA_ligase
DNA_ligase_A_M
Motif
Other DBs
NCBI-ProteinID:
AKB20278
UniProt:
A0A0E3KW11
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Position
complement(7386..8558)
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AA seq
390 aa
AA seq
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MNKEENGEIDPNFISRLAACLGFETERIQHLFEKNYLARNWGKYDYLFRFDKEISHIERG
TVLYEKDDSFEVIMGFPKIRRAMVLDPTLKKHFSGLEKVIVEEKMNGYNVRVANVKGEVL
AITRSGYVCPYTTERAKEKLDLRFFDDFPELVLYGEMLGPDNPYVPKEIYGIESVEFYIF
DIREKNSGNPLSVARKHEILEKYSFLQVRYFGEIPLETAAEEITKIIRKLGEKEHEGVVI
KDPEMVLPSLKYTSSQSNCSDLRHAFKFYNEAGRDYMLPRIVREGFQTVEWDENEAEFKK
RYMQLGESILNPLREAIKSVKNGQRLYEEVRIRVRDLKTATEFEDYLKRLGVDAIFEAPQ
PAGDEYLINIKKVNKSTNDKTQAIWEGDLW
NT seq
1173 nt
NT seq
+upstream
nt +downstream
nt
atgaataaagaggagaatggggaaatagatcccaactttataagtcgactggctgcctgc
ctgggatttgagacggagaggattcaacacctttttgaaaagaattaccttgccagaaac
tgggggaaatatgactaccttttccgcttcgacaaagagatttcccatattgaaagggga
accgtgctttacgagaaagatgattcgtttgaagtaattatgggttttcctaagatccgg
agagccatggtcctggaccctactcttaaaaagcatttcagcgggcttgaaaaggtaatt
gttgaagagaaaatgaacgggtataatgtcagggtagcaaacgtaaaaggcgaggtcctg
gcaatcacccggagtggctatgtctgcccttacacgactgaaagggcaaaagagaagctt
gacctgagattttttgacgactttcccgaactcgtactttatggagagatgctgggccct
gacaatccttatgttccaaaagaaatctatggtatcgaatccgtggagttctacatcttc
gacatccgggagaaaaatagcggcaaccctctttccgtagccagaaaacacgaaattctg
gaaaaatacagctttctgcaagttcgatatttcggagagattcccctggaaacggcagct
gaagaaattacaaaaatcatccggaaacttggggaaaaagaacatgaaggcgtggttata
aaggaccctgaaatggttcttccttcccttaagtatacttcatcccagagtaattgctcc
gacctcaggcacgccttcaagttttacaacgaagccggaagggactatatgctccccaga
attgttagagaaggatttcagacagtggaatgggacgagaatgaagccgagttcaaaaag
cgttatatgcaacttggggaaagcatcctgaaccctctaagagaggcaatcaagagtgta
aagaatggtcagaggctctatgaagaggtcaggatcagagtaagggacctgaaaaccgcg
acagaatttgaagattacctcaaaaggcttggagtggatgcgatttttgaagccccgcaa
cccgcaggagacgagtatttgataaatattaaaaaagtcaataaaagcacaaatgataaa
actcaggcgatatgggaaggagatctctggtga
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