Methylomonas sp. LL1: IVG45_19900
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Entry
IVG45_19900 CDS
T07814
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mell
Methylomonas sp. LL1
Pathway
mell03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mell00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
IVG45_19900 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mell03021
]
IVG45_19900 (rpoC)
03400 DNA repair and recombination proteins [BR:
mell03400
]
IVG45_19900 (rpoC)
Enzymes [BR:
mell01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
IVG45_19900 (rpoC)
Transcription machinery [BR:
mell03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
IVG45_19900 (rpoC)
DNA repair and recombination proteins [BR:
mell03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
IVG45_19900 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
Biotin_lipoyl_2
Apocytochr_F_C
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
QPK63045
UniProt:
A0A7T0NY85
LinkDB
All DBs
Position
4260017..4264216
Genome browser
AA seq
1399 aa
AA seq
DB search
MNFLKRQGRTDDFDNIRIGLASPDMIRSWSYGEVKKPETINYRTFKPERDGLFCAKIFGP
ISDYECLCGKYKRLKHRGVICEKCGVEVTLSKVRRERMGHIELASPVAHIWFLKSLPSRI
ALLLDMTLRSIERVLYFETFVVTDAGMSPLEKGQLLTDEEYLNALEEHGDDFVAKMGAEA
IYDLLKSIDLKEEINILREEINSTSSDTKIKKFSKRLKVIDSLLASNNRPEWMIMKVLPV
LPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLTRLLDLNAPDIIVRNEKRMLQEAVD
ALLDNGRRGRAITGSNRRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPTLRLH
QCGLPKKMALELFKPFIFSKLQLRGLATTIKAAKKMVEREGAEVWDILEEVIREHPVLLN
RAPTLHRLGIQAFEPTLIEGKAIQLHPLVCSAFNADFDGDQMAVHIPLSIEAQLEARTLM
MATNNILSPANGEPVINPSQDVVLGLYYISREKINGKGEGSIFTDLAEIMKALDAKTVEL
QSKIEVRVTEKLKNAEGEFETIVSRKKTTVGRAIIWGIVPDGMPYELVNVDMTKKNISRL
INYSYRYLGIKETVILADQIMYLGFRYATRSGVSFGIEDMEIPVKKADIIRSAEAEVNEI
QNQYSSGLVTDGERYNKVVDIWSRANDQVAKVMMEGLGEDEVVDVSGNVVKQKSFNSIFM
MAESGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLDVLQYFISTHGARKGLA
DTALKTANSGYLTRRLVDVAQDLVIATTDCGTQNGLTMMPIIEGGDVVEPLIERVLGRVA
AVDVTEPAGNTVLIPAGTMIDENLVSVLEEHGIDKMLVRSVITCESRQGVCAKCYGRDLG
RGHLVNIGEAVGVVAAQSIGEPGTQLTMRTFHIGGAASRSAAVSNVQVKSAGSVKLNNLK
TVKNRESNLVAVSRSGEVGVMDDYGRERERYKIPYGAVLSIQDGSAVSAGDIIVNWDPHT
HPVITEVDGVIQLHDFIDGITVQEHSDEVTGLTSRVVTDPKQRSSAGKELRPMVRLIDEN
GGLINLPGTDIPAQYFLPAGAIVGVKDGGEVKVGDVLARIPQESSKTRDITGGLPRVADL
FEARKTKDPAILAEATGMVSFGKETKGKQRVIITDAEGEQYETLIPKWRHITVFEGEFVE
KGETIAEGELTPHDILRLRGVEELADYLVKEIQDVYRLQGVKINDKHIEAIIRQMLRKVE
ITASGETDFVKGEQVERTLMNAVNEQAEKEGKIPASYESLLLGITKASLATESFISAASF
QETTRVLTDAAVRGISDGLNGLKENVIVGRLIPAGTGLAYHEQRRKRRSAEASSDSDLSM
SAVEAVDVEEALKQALNIE
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
atgaatttcttaaagcgtcaaggtcgtacggacgattttgacaatatccgtatcggattg
gcctcgccggacatgattcgttcatggtcttatggcgaggtgaaaaaaccggaaaccatc
aattaccgtactttcaaaccggagcgggatggattgttttgcgccaagatttttgggcct
atcagcgattacgagtgcttgtgcggtaagtacaagcgcttgaaacatcgcggtgtcatc
tgcgaaaaatgtggtgttgaagtaaccttgtccaaagttcgcagggaacggatgggtcat
attgagctggctagcccggtggcgcatatctggtttttgaaatcgttgccgtccagaatt
gcactgctactggatatgacgctacgttcaattgagcgcgtgctgtattttgaaacattt
gtcgtgactgatgcgggcatgtcgccattggaaaaaggccagttgctgacggatgaagaa
tacctgaatgcgctagaagagcatggtgacgattttgtcgcgaaaatgggtgcggaagcc
atctatgatttgctgaaatccattgatctgaaagaagaaatcaacattcttcgcgaagaa
atcaattcgaccagttccgataccaaaatcaagaagttttcaaaacgtttgaaggtcatt
gattcgttgttggcgtcaaacaatcgtcctgaatggatgattatgaaggtgctgccggtg
ctgccgcctgaattacgtcccttggtgcccttggatggcggtcgctttgccacttccgat
ttgaatgatctgtatcgtcgcgtgatcaatagaaataatcggctgacccggttgttggat
ctgaatgcgcccgacattatcgtacgcaacgaaaaacgcatgctgcaagaagcggttgac
gccttgttggataacggtcggcgcggacgtgcgatcaccggcagcaacaggcggccattg
aaatccttggccgacatgatcaagggtaagcagggccgcttccgtcaaaacttgttgggt
aagcgggtcgactattcgggccgctccgtaatcgtggtgggaccgaccttaagattacac
caatgcggtttgcctaaaaaaatggcactggagttgttcaaaccgttcattttcagcaaa
ttgcaattgcgcggtttagcgacaaccattaaagccgccaaaaaaatggtggagcgcgag
ggtgccgaagtttgggatattctggaagaagtgattcgcgaacatccagtattgctgaac
cgcgcgccgacattgcacagactgggtattcaggctttcgaacccactttgatcgaaggt
aaggcgattcagttacaccctttggtttgtagtgcgttcaacgccgacttcgacggcgac
cagatggcggtacacattccgttgtccattgaggcgcaattggaagcccgcaccttgatg
atggcgaccaataatatattgtcaccggctaacggcgagccagtgatcaatccctcgcaa
gacgtggttttgggcttgtattacatcagccgcgagaaaattaatggtaagggcgagggt
agtatctttaccgatcttgccgaaatcatgaaggctttggatgccaagactgtcgagctg
caaagtaaaattgaagtcagagtcaccgagaaattgaaaaatgccgagggtgaattcgaa
accatcgtcagtagaaagaaaaccactgttggccgggctattatctggggaattgtcccc
gatggaatgccttacgaattggttaacgtggatatgaccaagaaaaatatttcccgattg
attaactatagctatcgctatttgggaattaaagagactgtgattttggcggaccaaatc
atgtatttgggttttcgctatgctacgcggtcgggcgtttctttcggtatcgaagacatg
gaaatacccgtcaagaaagccgacattattcgttcggcggaagcggaagttaatgaaatc
cagaatcaatattcatcgggtctggtaacggacggagagcgctacaacaaggttgtggat
atttggtcgcgcgccaatgaccaggttgccaaagtgatgatggaaggcctcggcgaagac
gaagtggtcgatgttagcggcaatgtagtgaagcagaaatcattcaactctatctttatg
atggcggagtcaggtgctaggggttccgccgcgcagatcaggcagttggctggtatgcgt
ggtttgatggctaagccagacggttcgatcatcgaaacgccaatcacggcaaatttccgc
gaaggtctcgacgtactgcagtactttatctccacccacggtgctcgaaaaggtttggcg
gatacggcgttgaaaaccgccaactcgggttacttgactcggcgcttggtggacgtggcc
caggatttggtgattgcgactaccgattgcggtactcagaacggcctgaccatgatgccc
atcattgaaggcggtgacgtggttgagccattgatcgagcgtgtgttgggtcgggttgcg
gctgttgatgtcaccgaaccggctggaaataccgtgctgattcccgcgggaaccatgatt
gacgaaaatctggtttcagttttggaagaacacggcattgataagatgttagtgcgttcc
gtcattacctgcgaatcacgccaaggtgtttgtgccaaatgttatggtcgcgatttaggt
cgtggtcatttggtcaatatcggcgaggcggtcggtgtggttgcggcccaatccattggg
gagcctggaactcagttgaccatgcgtaccttccatatcggtggcgcggcgtcaaggtcg
gcggcggtaagcaatgttcaagtcaaatccgcgggttccgtcaagctgaataacctgaaa
accgttaaaaaccgggaaagtaatttggttgcggtctcgagatcgggcgaggttggtgtg
atggatgactacgggcgcgagcgtgagcgctacaaaatcccgtatggcgcggttttatct
atccaagacggtagtgcggtaagcgcgggtgacatcatcgtgaattgggatccgcacaca
catccggttatcaccgaggtggatggtgtcattcagcttcatgactttatcgacggcatc
acagtgcaagagcattccgatgaggtaaccggcttaacctcgcgcgtggttacggatcct
aagcagagaagttccgcgggtaaggagttgcgtcccatggtgcggttgattgatgaaaat
ggcgggttgataaacctgccgggtacggacattccagcacagtatttcctgcccgccggc
gcgatcgttggtgttaaagacggcggtgaagtgaaggtgggtgacgttctcgccagaatc
ccacaagagtccagtaagacccgtgacatcaccggtggtcttcctcgcgtggccgatttg
ttcgaggcgcgtaaaaccaaggacccggcgattctggcggaagcaaccggcatggtttct
ttcggcaaggaaaccaagggcaaacaacgcgtcataattaccgatgcggaaggtgagcag
tatgaaaccctgataccaaaatggcgtcatatcaccgtgttcgagggtgagttcgtcgaa
aagggtgaaaccattgccgaaggtgagttaacaccgcacgatatcctgcgtctacgtggc
gttgaagaattggccgactatctggttaaggaaattcaagacgtttaccgtctgcaaggg
gtaaaaatcaacgataagcacatcgaggcgattattcgtcagatgctgagaaaagttgaa
attaccgcgtcgggtgaaactgactttgtcaagggtgagcaagtagaacgtactctgatg
aatgcggtaaatgaacaagccgagaaagaaggcaaaattccggcaagttatgagtcgctg
ttattgggtattaccaaagcgtccttggcgaccgaatcatttatctctgccgcgtcgttc
caggaaacaactcgtgttctgaccgatgcggccgtaaggggtatcagcgatggtctgaat
ggtttgaaggaaaacgttatagttggtagattgatcccagccggtactggcttggcatat
catgagcagcgccgtaagagaagatcggctgaagcatcgtcggatagcgatttatcaatg
agtgccgtcgaagcggtcgatgttgaggaagccttgaagcaagccttgaacatcgagtaa
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integrated database retrieval system
