Chelativorans sp. BNC1: Meso_4100
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Entry
Meso_4100 CDS
T00374
Name
(GenBank) DNA-(apurinic or apyrimidinic site) lyase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
mes
Chelativorans sp. BNC1
Pathway
mes03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
mes00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Meso_4100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mes03400
]
Meso_4100
Enzymes [BR:
mes01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
Meso_4100
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
Meso_4100
DNA repair and recombination proteins [BR:
mes03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Meso_4100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
ABG65467
UniProt:
Q11AV8
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All DBs
Position
4409575..4410468
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AA seq
297 aa
AA seq
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MPELPEVETVRRGLEPVMEGARIIHVEQRRADLRFPFPAGFSEHVKGCRIEALGRRAKYL
LLHLENGRVLVSHLGMSGSFRIEESGSDKLRGDFHYARSKAEKHDHVVFHLARHEGGSAR
VIYNDPRRFGFMLLLDSADLEAHPLFAGLGVEPTGNALDGALLARLLAGKRAPLKAALMD
QRLVAGLGNIYVCEALWRAGLSPRRIAATIATREGKSTGRSERLAGAIRTVIAEAIAAGG
SSLKDYVQADGSLGYFQHSFSVYDREGKPCRKEGCSGTIQRFVQGGRSTFYCPICQR
NT seq
894 nt
NT seq
+upstream
nt +downstream
nt
atgcctgagcttccagaggtcgaaacagtccggcgtggcctggagcctgtgatggaaggc
gcgcggataatccacgtcgagcagcgccgcgccgatctgcgctttccctttcccgccggc
ttttccgaacacgtgaaaggatgcaggatcgaggctctcgggcgccgcgcaaaatatctg
cttctccacctggaaaacggcagggtgctcgtaagccatttgggcatgtccggctctttt
cgcatcgaggagagcgggtcggacaagcttcgcggtgacttccattacgcgcgttcaaag
gccgagaagcacgaccatgtcgtcttccacctggcgcggcacgaaggcggctcggcccgc
gtcatctacaatgatccgcggcgcttcggcttcatgcttctcctggacagcgcggatctg
gaagcgcacccgctttttgccgggctcggcgtcgaacccaccggcaatgcgcttgacggc
gcgcttctggcccggctgcttgccggaaagcgtgccccgctcaaggctgcgctcatggac
cagcggttggtggctggccttggcaacatctatgtatgcgaggcgctttggcgcgcgggt
ctttcaccgcgccgtatcgccgctacgatcgcgacacgcgagggcaaatcgacgggacgc
agcgagcgtttggctggggcgatccgcacggttattgccgaggccatcgcggcgggaggc
tcatccctcaaggattatgtccaggcagacggctcgctcggctattttcaacatagcttc
agcgtctatgatcgcgaggggaagccctgccgcaaggaaggttgttcaggcacgatccag
cggttcgtgcagggaggccgctctacattctattgccctatatgtcagcgctag
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