Manihot esculenta (cassava): 110604547
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Entry
110604547 CDS
T05761
Name
(RefSeq) DNA ligase 6 isoform X1
Organism
mesc
Manihot esculenta (cassava)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DRMBL
DNA_ligase_A_C
RMMBL
Lactamase_B_2
Motif
Other DBs
NCBI-GeneID:
110604547
NCBI-ProteinID:
XP_021598452
LinkDB
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Position
2:complement(5557371..5567940)
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AA seq
1405 aa
AA seq
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MEACKSTDKPPEALDSLRLYHNSLASLSLRIPPHDQPSSLPLPSSLPLSKLIPGTRFLVD
AFRFSTSSSITYFLSHFHSDHYTGLSSNWSQGLIFCSPTTANLLIQVLKIPSQFVFPLPL
LEPVIIDGSQVTLVDANHCPGAVQFLFKVPGKDQEGFEMYIHTGDFRYHSSMKEDGLISQ
FVGCDAIFLDTTYCNPKFLFPSQQESIDHIVSVIKRIRGDFMIQEKSVLFLVATYVVGKE
RILLEIAQRCKRKVHVDGRKMEVLRVLGHGESGVFTEDENESDVHVVGWNVLGETWPYFR
PNFVRMKEIMVERGYSKVVGFVPTGWTYEVKRHKFSVRSKDSCEIHLVPYSEHSNYDELR
EYVKFLRPKRVIPTVGVDIEKFNSKHTIKIQKHFAGLVDEMANKKEFLMAFHHGSCENDE
KAGLEDVVELNERMDPEEDGNLSEVKALEDKDPGVVLNSSSTLQEHGSQNLTILNDDETE
KIIRELSDSLPSWVTRDQMLDLIQSSGGNFVDTVSNFYEHETEFHQQIFPCRTSMCSSQT
DSLNESESLSNQVSIKNSQETSGTTPLSQNYKSSNLKPSSKSGMTLGKRKRSVGKKAKTN
SKLESGGPRQSTITRFFNKLVPDVSQGSEVQFLPGQSMEENSLQNDDTNSYKEEIYQFIQ
IIGGNESSRGYAAVIMERTKGDINKALDVHYGNEGNFDQSVEKLVASDNLVQPQCNIHEC
SSAQDKTVSEEGKHMVDLSIQRSLKENVAATYVSLPPEKYNPIQHACWSIGEPAPYIHLA
QTFDLVEAEKGKIKATSMLCNMFRSLLALSPEDLLPAVYLCTNKIAADHENIELNIGGGL
VTSSLEEACGTNRSKLRDMYNSMGDLGDVAQMCRQKQTLLAPPSHLLIKDVFSVLQKISV
QTGTGSTLRKKRLIVNLMRSCREKEMKFIVRTLVRNLRIGAMMRTILPALAQAVAMNSLV
NFDEQKAESLKEKLQYLSSAVVEAYNILPDLGLIVPSLISKGIEFSSSTLSMVPGVPIKP
MLAKITNGVSQAVKLFQDKAFTCEYKYDGQRAQIHKLPNDTFRVFSRNGDETTSRFPDLI
NIMKESCKSAAVTFIVDAEVVAIDRKNGCKLMSFQELSSRERGSKDSFITVNNIKVDICV
FVFDIMFANGEQLLELPLRQRRKRLKDLFCDERMGYFEYAKEMTVETHDSCLTNDVTMAK
INSFLEEAWHSSCEGIMVKSLDVHAEYSPSKRTDTWLKVKRDYVEGLNDSLDLVPIGAWH
GNGRKAGWYSPFLMACYNPETEDFQSVCRVMSGFSDVFYTEMKAFFSEDRILLKKPSYYQ
TSEVPDLWFSPELVWAIRGADLTVSPVHHAAIGLVHPSRGISMRFPRFVRPVSDRNPEEC
STAADIAEMFNSQTRKMNVTGTAAK
NT seq
4218 nt
NT seq
+upstream
nt +downstream
nt
atggaagcctgcaaatccaccgacaaaccacccgaagccctagactctctccgtctttac
cacaactctcttgcttccctctccctccgaatccctccacatgaccaaccctcctcgctc
cctctcccctcctctctcccactgtccaagctcatccccggaactcgcttcctcgtcgac
gctttccgcttctccacctcctcctccatcacctactttctttcccatttccactctgac
cactacaccggcctttcttctaattggtctcagggcctcattttctgctcccccacaaca
gccaatctcctcatccaagtcctcaagattccctcgcagttcgtcttcccattgcctctg
ctcgagcccgtgattattgatggttctcaagttacattagttgatgctaatcactgcccg
ggggcggtgcagttcttgtttaaggttcctggtaaggatcaagaagggtttgaaatgtat
attcatactggtgattttagataccatagttcgatgaaagaggatggcttaattagtcag
tttgttggttgtgatgcgattttcttggatactacttattgtaatcctaaattccttttt
ccctcgcaacaggagtctatcgatcatatagttagtgttataaagagaataaggggagat
tttatgattcaagaaaagagcgtgttgtttcttgtcgcgacttatgtggttgggaaggag
aggattttgcttgagattgcgcaaaggtgtaaaagaaaggtgcatgtagatgggaggaag
atggaggttttgcgggttttgggacacggggaaagtggggtgtttacagaggatgagaat
gaaagtgatgttcatgttgttgggtggaacgtgttaggagagacatggccatactttcgg
ccaaattttgttagaatgaaggaaataatggtggaaagaggatattctaaggttgttgga
tttgtcccaactggatggacttatgaagtgaagcgtcataaattctctgtcaggtcaaag
gattcatgtgagatccatcttgtgccatacagtgagcattcaaattatgatgagcttaga
gagtatgtgaagttcttgagacctaagcgtgtcattcctacagttggcgtggatattgaa
aaattcaacagtaaacacactattaaaattcagaagcattttgctggtttagttgacgaa
atggctaacaagaaagagtttttgatggcttttcatcatggatcatgtgagaatgatgaa
aaggctggattggaagatgtggtagagttgaacgagcgcatggatccagaggaagatggg
aatttatctgaagtgaaagcccttgaagataaggatccaggtgttgttttgaactcttca
tctactctgcaagaacatggttcacaaaatttaactatactaaatgatgacgaaacagaa
aaaataatacgagaacttagcgattctttgccctcgtgggttactcgagaccaaatgtta
gatttgattcaaagctcaggagggaattttgttgatacagtttcaaacttttatgaacac
gaaacagaatttcatcaacaaatctttccttgtaggacatccatgtgttcttctcagact
gattctctcaacgaatctgaatcactttcaaatcaagtttctatcaagaatagccaagag
acttcagggacgactcctttgagtcaaaattataagtcatcaaacttaaagccttcaagc
aaaagtggtatgactcttggaaaaaggaagaggagtgttggcaagaaggcaaaaacgaac
tcaaaattggaatctggtggaccaaggcagtctactattacaaggttctttaataaactc
gttcctgatgtttctcaaggtagtgaggtccaattcttacctggtcaatctatggaagaa
aattcattgcagaatgatgatacaaactcatacaaagaggagatatatcagtttattcag
ataattggcggtaatgaatcatcaagaggctatgctgccgttatcatggagaggaccaaa
ggagacattaataaggcattagatgtgcattatggtaatgaaggtaactttgatcagagt
gtagagaaattggttgcatcagacaatttggttcagcctcagtgcaatattcatgagtgc
tcttctgcccaggacaaaactgtatcagaggagggaaagcatatggttgatctgtccata
cagagatcattgaaagaaaatgtcgctgctacttatgtttcactaccaccagaaaaatac
aatcccatacaacatgcatgctggagtattggagagcctgctccctatatccatcttgca
caaacatttgacctagttgaggcggaaaagggaaagatcaaggctacttccatgttgtgc
aatatgtttagaagtttgctagcgttgtctcctgaggatttgctacctgctgtgtatctg
tgcacaaacaagattgctgctgaccatgaaaatatagagctcaacattggtggaggcttg
gtcacttcgtcgctagaagaggcatgtgggacaaaccggtctaaactaagggatatgtac
aatagtatgggggatcttggtgatgttgctcaaatgtgccgacaaaaacagacattactt
gctcctccttctcaccttctcataaaagatgtattttctgttctccaaaagataagtgtg
caaacaggtactggaagcactcttcgaaagaagaggctcattgtaaatctcatgcgttct
tgcagggagaaggagatgaagtttattgttagaactttggtaagaaacttacggattgga
gctatgatgagaactattctacctgcattggctcaagctgttgctatgaattccttggtc
aatttcgatgaacaaaaagctgaaagtttgaaggagaaacttcagtacctttcctcagca
gtcgtagaagcatataatatacttccagatttgggtttgatcgttccctcactcataagc
aaaggcattgaattttcatcatcaactttgtctatggtgccaggagtacctattaaaccg
atgctggcaaaaattacaaatggagtttcccaagcagttaaactctttcaagataaagct
tttacatgtgaatacaaatatgatggtcagcgtgcccaaattcacaaattaccaaatgac
acttttcgtgtattttcacggaatggggatgaaacaacatcaagatttccagatttgatc
aatataatgaaggaatcttgtaaatctgctgcagtaactttcatagtggatgcagaggtg
gttgcaattgatagaaaaaatggctgcaagctcatgtcattccaggaactatcatcaagg
gagagagggagcaaagattcctttatcacagtgaataatataaaggttgatatttgtgta
tttgtctttgatatcatgtttgctaatggagaacagctgctggagcttcctcttcgccaa
agaaggaaacgcctaaaggatttgttttgtgatgagaggatgggctattttgagtacgca
aaggaaatgacggttgaaactcatgattcttgtttgaccaatgatgtaacaatggccaag
ataaactctttccttgaagaagcatggcattcctcatgtgaaggaattatggtgaaatct
ttagatgttcatgctgaatattctccctcaaaacgtacagacacatggctaaaggtcaag
cgagattatgtagaaggattgaatgactcacttgatttagtccccattggtgcttggcat
ggtaatgggagaaaagcaggatggtatagtccatttctcatggcatgttacaaccctgag
actgaggacttccagagtgtttgccgtgtcatgtctgggttctcagatgtattttacact
gagatgaaagcattcttttctgaagatagaatattgttgaaaaagccgtcctactaccaa
acttcggaggtgccagatttgtggttttctccagaacttgtttgggcaatacgcggtgca
gacttgactgtttctccagttcaccatgctgctataggtttagttcatccatcccgtggc
atctccatgagatttccaagatttgttcgccctgtgtcagacagaaatccggaggaatgt
agcacagcggcagatattgcagaaatgtttaattctcaaacacggaagatgaatgtaaca
ggcacagctgccaagtaa
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