Manihot esculenta (cassava): 110613414
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Entry
110613414 CDS
T05761
Name
(RefSeq) histone deacetylase 9 isoform X1
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03082
ATP-dependent chromatin remodeling
mesc03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
110613414
03083 Polycomb repressive complex
110613414
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
mesc03036
]
110613414
Enzymes [BR:
mesc01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
110613414
Chromosome and associated proteins [BR:
mesc03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
110613414
HDAC complexes
Sin3A-HDAC complex
110613414
BRAF-HDAC complex
110613414
REST complex
110613414
SHIP complex
110613414
MiDAC complex
110613414
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
110613414
Heterochromatin formation proteins
Other heterochromatin formation proteins
110613414
Chromatin remodeling factors
NuRD complex
110613414
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
110613414
NCBI-ProteinID:
XP_021610208
LinkDB
All DBs
Position
4:complement(930816..936812)
Genome browser
AA seq
430 aa
AA seq
DB search
MRSKDRISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYELHKKMEIYRPHKAYPVEL
AQFHSADYVEFLHRIAPDTQHLFANELARYNLGEDCPVFENLFEFCQIYAGGTIDAARRL
NNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVE
EAFYFTDRVMTVSFHKYGDLFFPGTGDVKDVGEREGKFYAINVPLKDGIDDTSFNRLFKT
IISKVVETYLPGVIVLQCGADSLARDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGY
TKENVARCWTVETGVLLDTELPNEIPDNEYIKYFAPEYSLKIPGGQIENLNSKSYLSTIK
MQVLENLRCIQHAPSVQMQEVPPDFYIPDFDEDEQNPDERMDQHTQDKHIQRDDEYYEGD
NDNDHNMDAP
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atgcgctccaaggacagaatttcttacttctatgacggggatgtgggtagcgtttacttt
gggccgaatcatccaatgaagccacaccggctttgtatgactcatcatcttgttctctcc
tatgagctccataagaagatggagatttatcggcctcacaaggcatatcctgttgagctt
gcgcagttccattcagctgactatgttgaatttttacaccggattgcaccagacactcaa
cacttgtttgcaaatgaattggcaagatataatcttggagaagattgtcctgtctttgaa
aacctgttcgaattttgtcaaatttatgctggtggaacaatagatgctgcacgtagatta
aacaaccaactatgtgacattgctataaactgggctggtggattacaccatgccaagaag
tgtgaggcatctggattttgctacatcaacgacttagttttggggattttggagcttctg
aaatatcatgcacgtgttttatatattgatatagacgtacatcatggtgatggtgtcgaa
gaagccttttatttcactgacagggtgatgaccgtgagttttcacaagtatggggatttg
ttctttcctggaaccggagatgttaaggatgtaggagaaagagaaggaaagttttatgct
ataaatgtccccctgaaggatggcatagatgacaccagcttcaatcgactttttaaaaca
attatctccaaggttgtagagacatatctgccaggtgtaatagttcttcaatgtggagca
gattctttagctagagatcgcttaggctgtttcaatctctccattgatgggcatgctgaa
tgtgttaggtttgtgaagaaattcaatttgcctttactggttactggaggtggagggtac
acaaaagagaatgttgctcgatgttggactgttgaaacaggagttcttttagatacagag
ctacctaatgagatcccagataatgagtatatcaaatattttgcccccgagtattctttg
aagattccaggtggacaaatagagaatttaaatagcaaatcttaccttagcacaataaaa
atgcaagtactggaaaatcttcgatgcatacaacatgctccaagtgtacaaatgcaagag
gttccacccgatttttatattcctgattttgatgaagacgagcaaaacccagatgagcgc
atggatcagcatactcaagacaagcatattcaaagagatgatgaatattatgaaggggac
aatgacaatgatcataacatggatgctccttga
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