KEGG   Manihot esculenta (cassava): 110613414
Entry
110613414         CDS       T05761                                 
Name
(RefSeq) histone deacetylase 9 isoform X1
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
mesc  Manihot esculenta (cassava)
Pathway
mesc03082  ATP-dependent chromatin remodeling
mesc03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:mesc00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    110613414
   03083 Polycomb repressive complex
    110613414
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:mesc03036]
    110613414
Enzymes [BR:mesc01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     110613414
Chromosome and associated proteins [BR:mesc03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     110613414
   HDAC complexes
    Sin3A-HDAC complex
     110613414
    BRAF-HDAC complex
     110613414
    REST complex
     110613414
    SHIP complex
     110613414
    MiDAC complex
     110613414
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     110613414
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    110613414
  Chromatin remodeling factors
   NuRD complex
    110613414
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 110613414
NCBI-ProteinID: XP_021610208
LinkDB
Position
4:complement(930816..936812)
AA seq 430 aa
MRSKDRISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYELHKKMEIYRPHKAYPVEL
AQFHSADYVEFLHRIAPDTQHLFANELARYNLGEDCPVFENLFEFCQIYAGGTIDAARRL
NNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVE
EAFYFTDRVMTVSFHKYGDLFFPGTGDVKDVGEREGKFYAINVPLKDGIDDTSFNRLFKT
IISKVVETYLPGVIVLQCGADSLARDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGY
TKENVARCWTVETGVLLDTELPNEIPDNEYIKYFAPEYSLKIPGGQIENLNSKSYLSTIK
MQVLENLRCIQHAPSVQMQEVPPDFYIPDFDEDEQNPDERMDQHTQDKHIQRDDEYYEGD
NDNDHNMDAP
NT seq 1293 nt   +upstreamnt  +downstreamnt
atgcgctccaaggacagaatttcttacttctatgacggggatgtgggtagcgtttacttt
gggccgaatcatccaatgaagccacaccggctttgtatgactcatcatcttgttctctcc
tatgagctccataagaagatggagatttatcggcctcacaaggcatatcctgttgagctt
gcgcagttccattcagctgactatgttgaatttttacaccggattgcaccagacactcaa
cacttgtttgcaaatgaattggcaagatataatcttggagaagattgtcctgtctttgaa
aacctgttcgaattttgtcaaatttatgctggtggaacaatagatgctgcacgtagatta
aacaaccaactatgtgacattgctataaactgggctggtggattacaccatgccaagaag
tgtgaggcatctggattttgctacatcaacgacttagttttggggattttggagcttctg
aaatatcatgcacgtgttttatatattgatatagacgtacatcatggtgatggtgtcgaa
gaagccttttatttcactgacagggtgatgaccgtgagttttcacaagtatggggatttg
ttctttcctggaaccggagatgttaaggatgtaggagaaagagaaggaaagttttatgct
ataaatgtccccctgaaggatggcatagatgacaccagcttcaatcgactttttaaaaca
attatctccaaggttgtagagacatatctgccaggtgtaatagttcttcaatgtggagca
gattctttagctagagatcgcttaggctgtttcaatctctccattgatgggcatgctgaa
tgtgttaggtttgtgaagaaattcaatttgcctttactggttactggaggtggagggtac
acaaaagagaatgttgctcgatgttggactgttgaaacaggagttcttttagatacagag
ctacctaatgagatcccagataatgagtatatcaaatattttgcccccgagtattctttg
aagattccaggtggacaaatagagaatttaaatagcaaatcttaccttagcacaataaaa
atgcaagtactggaaaatcttcgatgcatacaacatgctccaagtgtacaaatgcaagag
gttccacccgatttttatattcctgattttgatgaagacgagcaaaacccagatgagcgc
atggatcagcatactcaagacaagcatattcaaagagatgatgaatattatgaaggggac
aatgacaatgatcataacatggatgctccttga

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